DOCK version 3.5.54, compiled on 20120216 CPU, Date, and Time: node-6-09.c.bkslab.org 21-Feb-12 11:16:17 Solvation type: no ligand desolvation Internal Distance Clashes will be checked Receptor spheres: ../../sph/match2.sph Receptor cluster number(s): 1 :dislim = 1.5000 maxnodes = 4 ratiom = 0.0000 minnodes = 3 :lbinsz = 0.4000 lovlap = 0.1000 sbinsz = 0.4000 sovlap = 0.1000 Input ligand: ../database_link/dbgen_lig_0002.db.gz DelPhi grid: ../../grids/rec+sph.phi vdW parms: ../../grids/vdw.parms.amb.mindock chemgrid prefix: ../../grids/chem resolution = 0.3300000 number of points = 1821948 a maximum of 1 bad contacts will be allowed for each orientation random seed = 777 natmin = 5 natmax = 100 nsav = 50000 300000 molecules may be searched in this run hydrogens always written out zooming will not be done trilinear interpolation is always done Orientation minimization: best conformation Simplex parameters: Max energy to minimize: 0.100E+16 Max step-size for translation (A): 0.20 Max step-size for euler angles: 5.00 Min energy change for restart (kcal/mol): 1.00 Energy convergence tolerance (kcal/mol): 0.10 Max number of iterations: 200 database version: 5.2 7 colors used in ligand database file 12 colors used in receptor sphere file ligand color positive 1 merged number = 1 ligand color negative 2 merged number = 2 ligand color acceptor 3 merged number = 3 ligand color donor 4 merged number = 4 ligand color ester_o 5 merged number = 5 ligand color amide_o 6 merged number = 6 ligand color neutral 7 merged number = 7 receptor color positive 1 merged number = 1 receptor color negative 2 merged number = 2 receptor color acceptor 3 merged number = 3 receptor color donor 4 merged number = 4 receptor color ester_o 5 merged number = 5 receptor color amide_o 6 merged number = 6 receptor color neutral 7 merged number = 7 receptor color not_neutral 8 merged number = 8 receptor color positive_or_donor 9 merged number = 9 receptor color negative_or_acceptor 10 merged number = 10 receptor color neutral_or_acceptor_or_donor 11 merged number = 11 receptor color donacc 12 merged number = 12 12 colors in merged ligand-sphere color table this is a run with labeled color matching: match positive negative match positive negative_or_acceptor match positive not_neutral match negative positive match negative positive_or_donor match negative not_neutral match donor acceptor match donor donacc match donor negative_or_acceptor match donor neutral_or_acceptor_or_donor match donor not_neutral match acceptor donor match acceptor donacc match acceptor positive_or_donor match acceptor neutral_or_acceptor_or_donor match acceptor not_neutral match neutral neutral match neutral neutral_or_acceptor_or_donor match ester_o donor match ester_o donacc match ester_o positive_or_donor match ester_o not_neutral match amide_o donor match amide_o donacc match amide_o positive_or_donor match amide_o not_neutral 26 chemical matches specified grid min 4.811000 17.99700 64.24200 grid max 42.10100 60.89700 104.1720 using cluster number: 1 output file: test.eel1.gz Receptor spheres: 45 0 0 0 0 0 38 non-zero colors in receptor sphere cluster cluster 1 with 45 spheres 9001 9002 9003 9004 9005 9006 9007 9008 9009 9010 9011 9012 9013 9014 9015 9016 9017 9018 9019 9020 9021 9022 9023 9024 9025 9026 9027 9028 9029 9030 9031 9032 9033 9034 9035 9036 9037 9038 9039 9040 9041 9042 9043 9044 9045 maximum receptor sphere-sphere distance 12.24758 mol# id_num matched nscored nhvy nconfs part.fcn Time E id_num nbr elect + vdW + polsol + apolsol = Total 1 520053 2220 1730816 37 540 1852.7 2.20 E 520053 4 -5.12 -30.40 0.00 0.00 -35.52 2 407991 2533 607241 39 3741 313.8 0.64 E 407991 4 -6.24 -29.48 0.00 0.00 -35.72 3 407991 2149 2277623 39 165 2196.8 3.25 E 407991 2 -10.52 -26.80 0.00 0.00 -37.32 4 407991 4425 1788148 39 4155 1030.0 1.87 E 407991 4 -15.37 -30.51 0.00 0.00 -45.88 5 407991 1088 472012 39 451 126.1 0.62 E 407991 2 -3.54 -29.36 0.00 0.00 -32.90 6 407991 5427 297006 39 1367 68.5 0.38 E 407991 2 -5.40 -31.42 0.00 0.00 -36.82 7 407991 2540 510738 39 3948 305.1 0.64 E 407991 4 -9.46 -28.82 0.00 0.00 -38.28 8 407991 2152 2594714 39 203 2334.0 3.32 E 407991 2 -9.40 -26.54 0.00 0.00 -35.94 9 407991 2719 1455299 39 3120 898.0 1.89 E 407991 4 -14.95 -31.01 0.00 0.00 -45.97 10 407991 994 385858 39 343 155.0 0.59 E 407991 2 -3.75 -29.77 0.00 0.00 -33.52 11 407991 3789 160552 39 1561 35.8 0.25 E 407991 2 -5.27 -29.05 0.00 0.00 -34.32 12 407991 2534 590563 39 4284 90.0 0.65 E 407991 4 -15.30 -29.57 0.00 0.00 -44.87 13 407991 2143 2605828 39 222 2132.6 3.08 E 407991 2 -10.03 -24.24 0.00 0.00 -34.28 14 407991 4175 2042566 39 6768 1337.3 2.35 E 407991 4 -15.19 -32.46 0.00 0.00 -47.66 15 407991 1177 484252 39 442 230.0 0.69 E 407991 2 -2.62 -29.55 0.00 0.00 -32.17 16 407991 3795 280586 39 1971 19.2 0.34 E 407991 2 -2.02 -33.47 0.00 0.00 -35.49 17 407991 2533 575879 39 8064 408.0 0.64 E 407991 4 -12.01 -32.81 0.00 0.00 -44.83 18 407991 2149 2832082 39 250 1454.5 3.34 E 407991 2 -9.22 -26.24 0.00 0.00 -35.46 19 407991 4426 1635889 39 5454 258.0 1.81 E 407991 4 -12.77 -33.47 0.00 0.00 -46.24 20 407991 1831 477647 39 541 448.0 0.73 E 407991 2 -0.79 -28.65 0.00 0.00 -29.44 21 407991 5427 338062 39 1735 25.4 0.46 E 407991 2 -7.70 -31.80 0.00 0.00 -39.50 22 408010 2533 624483 41 5586 342.0 0.71 E 408010 4 -17.18 -29.92 0.00 0.00 -47.09 23 408010 2142 2575452 41 317 973.3 3.61 E 408010 2 -10.02 -25.65 0.00 0.00 -35.67 24 408010 4175 1983752 41 5040 482.1 2.26 E 408010 4 -19.16 -34.46 0.00 0.00 -53.62 25 408010 2377 609143 41 878 443.0 0.91 E 408010 2 -22.46 -21.68 0.00 0.00 -44.14 26 408010 3795 182609 41 1642 24.0 0.24 E 408010 2 -17.51 -29.73 0.00 0.00 -47.24 27 432555 2540 883553 37 7620 338.3 0.83 E 432555 4 -3.71 -30.78 0.00 0.00 -34.49 28 432555 2727 1612878 37 65163 271.1 1.33 E 432555 4 -7.75 -38.41 0.00 0.00 -46.16 29 432555 6748 3310299 37 3066 578.3 2.69 E 432555 2 -6.25 -33.50 0.00 0.00 -39.74 30 432555 0 0 37 8061 0.00 no_match 31 460141 2535 1309673 31 380 186.1 1.33 E 460141 4 -17.23 -25.44 0.00 0.00 -42.67 32 460141 4051 2361849 31 1950 783.0 2.23 E 460141 4 -21.53 -29.24 0.00 0.00 -50.77 33 460141 3595 894310 31 171 439.7 0.82 E 460141 2 -21.18 -21.51 0.00 0.00 -42.70 34 460141 2532 1303984 31 544 837.8 1.25 E 460141 4 -18.72 -26.93 0.00 0.00 -45.65 35 460141 4051 2552377 31 2964 2652.0 2.33 E 460141 4 -14.34 -34.83 0.00 0.00 -49.17 36 460141 3478 1381100 31 218 1266.0 1.20 E 460141 2 -22.96 -16.97 0.00 0.00 -39.92 37 459602 2533 1349608 31 376 737.3 1.33 E 459602 4 -17.85 -23.97 0.00 0.00 -41.83 38 459602 4204 2394192 31 1560 14.9 2.21 E 459602 4 -22.05 -28.83 0.00 0.00 -50.88 39 459602 3585 927166 31 175 786.4 0.84 E 459602 2 -19.50 -24.87 0.00 0.00 -44.37 40 459602 2538 1340885 31 528 678.0 1.31 E 459602 4 -19.76 -22.04 0.00 0.00 -41.81 41 459602 4204 2657252 31 2808 2291.2 2.45 E 459602 4 -15.23 -34.38 0.00 0.00 -49.61 42 459602 3481 1323613 31 226 614.0 1.16 E 459602 2 -23.40 -21.69 0.00 0.00 -45.09 43 158592 1720 351862 27 72 226.2 0.36 E 158592 3 -4.55 -24.80 0.00 0.00 -29.34 44 158592 4181 1294914 27 144 866.2 1.45 E 158592 4 -5.10 -26.05 0.00 0.00 -31.15 45 158592 1959 706271 27 42 596.0 0.71 E 158592 3 -2.38 -28.49 0.00 0.00 -30.87 46 158592 5912 1382160 27 72 1034.2 1.52 E 158592 2 -7.87 -21.80 0.00 0.00 -29.67 47 158592 1723 380406 27 72 440.2 0.37 E 158592 3 -2.76 -28.13 0.00 0.00 -30.89 48 158592 4181 879958 27 288 779.6 1.01 E 158592 4 -4.49 -28.75 0.00 0.00 -33.24 49 158592 7899 1459977 27 42 2216.0 1.57 E 158592 3 -7.52 -24.95 0.00 0.00 -32.48 50 158592 5911 1606505 27 42 1913.1 1.73 E 158592 2 -4.01 -26.20 0.00 0.00 -30.21 51 14785 665 434807 29 2016 215.6 0.30 E 14785 4 -4.87 -29.12 0.00 0.00 -33.99 52 14785 4032 1788290 29 744 1264.6 1.65 E 14785 2 -7.27 -26.47 0.00 0.00 -33.74 53 221646 2037 955708 16 8 2722.9 0.73 E 221646 4 -11.94 -17.29 0.00 0.00 -29.23 54 555094 3619 201601 35 9 444.4 0.40 E 555094 3 -12.88 -35.73 0.00 0.00 -48.61 55 555094 5997 153902 35 9 280.6 0.33 E 555094 3 -6.56 -34.40 0.00 0.00 -40.97 EOF: ../database_link/dbgen_lig_0002.db.gz end of file encountered total minimization steps = 4276439 for debugging, time = 73.87000 solvation corrected scores: (a) 1 408010 score: -53.618 nathvy = 41 nconfs = 5040 2 459602 score: -50.882 nathvy = 31 nconfs = 1560 3 460141 score: -50.770 nathvy = 31 nconfs = 1950 4 459602 score: -49.609 nathvy = 31 nconfs = 2808 5 460141 score: -49.170 nathvy = 31 nconfs = 2964 6 555094 score: -48.612 nathvy = 35 nconfs = 9 7 407991 score: -47.657 nathvy = 39 nconfs = 6768 8 408010 score: -47.244 nathvy = 41 nconfs = 1642 9 408010 score: -47.095 nathvy = 41 nconfs = 5586 10 407991 score: -46.243 nathvy = 39 nconfs = 5454 11 432555 score: -46.161 nathvy = 37 nconfs = 65163 12 407991 score: -45.966 nathvy = 39 nconfs = 3120 13 407991 score: -45.877 nathvy = 39 nconfs = 4155 14 460141 score: -45.651 nathvy = 31 nconfs = 544 15 459602 score: -45.087 nathvy = 31 nconfs = 226 16 407991 score: -44.873 nathvy = 39 nconfs = 4284 17 407991 score: -44.825 nathvy = 39 nconfs = 8064 18 459602 score: -44.370 nathvy = 31 nconfs = 175 19 408010 score: -44.143 nathvy = 41 nconfs = 878 20 460141 score: -42.696 nathvy = 31 nconfs = 171 21 460141 score: -42.675 nathvy = 31 nconfs = 380 22 459602 score: -41.825 nathvy = 31 nconfs = 376 23 459602 score: -41.808 nathvy = 31 nconfs = 528 24 555094 score: -40.966 nathvy = 35 nconfs = 9 25 460141 score: -39.924 nathvy = 31 nconfs = 218 26 432555 score: -39.745 nathvy = 37 nconfs = 3066 27 407991 score: -39.500 nathvy = 39 nconfs = 1735 28 407991 score: -38.277 nathvy = 39 nconfs = 3948 29 407991 score: -37.315 nathvy = 39 nconfs = 165 30 407991 score: -36.821 nathvy = 39 nconfs = 1367 31 407991 score: -35.937 nathvy = 39 nconfs = 203 32 407991 score: -35.721 nathvy = 39 nconfs = 3741 33 408010 score: -35.668 nathvy = 41 nconfs = 317 34 520053 score: -35.520 nathvy = 37 nconfs = 540 35 407991 score: -35.493 nathvy = 39 nconfs = 1971 36 407991 score: -35.455 nathvy = 39 nconfs = 250 37 432555 score: -34.493 nathvy = 37 nconfs = 7620 38 407991 score: -34.320 nathvy = 39 nconfs = 1561 39 407991 score: -34.275 nathvy = 39 nconfs = 222 40 14785 score: -33.991 nathvy = 29 nconfs = 2016 41 14785 score: -33.741 nathvy = 29 nconfs = 744 42 407991 score: -33.522 nathvy = 39 nconfs = 343 43 158592 score: -33.241 nathvy = 27 nconfs = 288 44 407991 score: -32.900 nathvy = 39 nconfs = 451 45 158592 score: -32.478 nathvy = 27 nconfs = 42 46 407991 score: -32.171 nathvy = 39 nconfs = 442 47 158592 score: -31.147 nathvy = 27 nconfs = 144 48 158592 score: -30.890 nathvy = 27 nconfs = 72 49 158592 score: -30.866 nathvy = 27 nconfs = 42 50 158592 score: -30.210 nathvy = 27 nconfs = 42 51 158592 score: -29.671 nathvy = 27 nconfs = 72 52 407991 score: -29.440 nathvy = 39 nconfs = 541 53 158592 score: -29.343 nathvy = 27 nconfs = 72 54 221646 score: -29.232 nathvy = 16 nconfs = 8 Date and Time: 21-Feb-12 11:17:31 elapsed time (sec): 73.9600