DOCK version 3.5.54, compiled on 20120216 CPU, Date, and Time: node-5-21.c.bkslab.org 18-Feb-12 04:05:37 Solvation type: context-dependent ligand desolvation Internal Distance Clashes will be checked Receptor spheres: ../../sph/match2.sph Receptor cluster number(s): 1 Desolvation grid: ../../grids/solvmap_sev :dislim = 1.5000 maxnodes = 4 ratiom = 0.0000 minnodes = 3 :lbinsz = 0.4000 lovlap = 0.1000 sbinsz = 0.4000 sovlap = 0.1000 Input ligand: ../database_link/dbgen_lig_0002.db.gz DelPhi grid: ../../grids/rec+sph_thinner.phi vdW parms: ../../grids/vdw.parms.amb.mindock chemgrid prefix: ../../grids/chem resolution = 0.3300000 number of points = 1821948 a maximum of 1 bad contacts will be allowed for each orientation random seed = 777 natmin = 5 natmax = 100 nsav = 50000 300000 molecules may be searched in this run hydrogens always written out zooming will not be done trilinear interpolation is always done Orientation minimization: best conformation Simplex parameters: Max energy to minimize: 0.100E+16 Max step-size for translation (A): 0.20 Max step-size for euler angles: 5.00 Min energy change for restart (kcal/mol): 1.00 Energy convergence tolerance (kcal/mol): 0.10 Max number of iterations: 200 database version: 5.2 7 colors used in ligand database file 12 colors used in receptor sphere file ligand color positive 1 merged number = 1 ligand color negative 2 merged number = 2 ligand color acceptor 3 merged number = 3 ligand color donor 4 merged number = 4 ligand color ester_o 5 merged number = 5 ligand color amide_o 6 merged number = 6 ligand color neutral 7 merged number = 7 receptor color positive 1 merged number = 1 receptor color negative 2 merged number = 2 receptor color acceptor 3 merged number = 3 receptor color donor 4 merged number = 4 receptor color ester_o 5 merged number = 5 receptor color amide_o 6 merged number = 6 receptor color neutral 7 merged number = 7 receptor color not_neutral 8 merged number = 8 receptor color positive_or_donor 9 merged number = 9 receptor color negative_or_acceptor 10 merged number = 10 receptor color neutral_or_acceptor_or_donor 11 merged number = 11 receptor color donacc 12 merged number = 12 12 colors in merged ligand-sphere color table this is a run with labeled color matching: match positive negative match positive negative_or_acceptor match positive not_neutral match negative positive match negative positive_or_donor match negative not_neutral match donor acceptor match donor donacc match donor negative_or_acceptor match donor neutral_or_acceptor_or_donor match donor not_neutral match acceptor donor match acceptor donacc match acceptor positive_or_donor match acceptor neutral_or_acceptor_or_donor match acceptor not_neutral match neutral neutral match neutral neutral_or_acceptor_or_donor match ester_o donor match ester_o donacc match ester_o positive_or_donor match ester_o not_neutral match amide_o donor match amide_o donacc match amide_o positive_or_donor match amide_o not_neutral 26 chemical matches specified grid min 4.889000 18.34500 64.43200 grid max 41.88900 60.84500 103.9320 using cluster number: 1 output file: test.eel1.gz Receptor spheres: 45 0 0 0 0 0 38 non-zero colors in receptor sphere cluster cluster 1 with 45 spheres 9001 9002 9003 9004 9005 9006 9007 9008 9009 9010 9011 9012 9013 9014 9015 9016 9017 9018 9019 9020 9021 9022 9023 9024 9025 9026 9027 9028 9029 9030 9031 9032 9033 9034 9035 9036 9037 9038 9039 9040 9041 9042 9043 9044 9045 maximum receptor sphere-sphere distance 12.24758 mol# id_num matched nscored nhvy nconfs part.fcn Time E id_num nbr elect + vdW + polsol + apolsol = Total 1 520053 2220 1754787 37 540 1743.7 1.71 E 520053 4 -2.35 -25.58 4.77 -2.82 -25.98 2 407991 2533 595125 39 3741 322.2 0.48 E 407991 4 -15.71 -24.32 10.03 -2.64 -32.64 3 407991 2149 2413566 39 165 1060.7 2.72 E 407991 2 -8.72 -26.94 9.75 -4.58 -30.49 4 407991 4425 1726165 39 4155 465.9 1.50 E 407991 4 -19.63 -32.00 11.92 -3.10 -42.81 5 407991 1088 472501 39 451 428.0 0.47 E 407991 2 -2.73 -25.80 5.31 -2.91 -26.13 6 407991 5427 295301 39 1367 106.4 0.30 E 407991 2 -3.44 -31.38 6.74 -3.64 -31.73 7 407991 2540 514149 39 3948 346.6 0.49 E 407991 4 -11.26 -29.28 10.26 -3.22 -33.50 8 407991 2152 2704181 39 203 2009.5 2.73 E 407991 2 -16.44 -24.82 13.99 -2.98 -30.25 9 407991 2719 1447032 39 3120 1053.9 1.44 E 407991 4 -18.18 -30.03 10.15 -3.15 -41.21 10 407991 994 375528 39 343 331.0 0.44 E 407991 2 -3.96 -28.86 6.52 -3.01 -29.31 11 407991 3789 155773 39 1561 88.0 0.20 E 407991 2 -6.16 -27.54 7.98 -3.96 -29.68 12 407991 2534 597501 39 4284 311.1 0.52 E 407991 4 -13.54 -28.28 11.64 -2.99 -33.17 13 407991 2143 2775409 39 222 1916.2 2.50 E 407991 2 -17.57 -22.73 13.72 -2.67 -29.26 14 407991 4175 2058098 39 6768 1336.0 1.84 E 407991 4 -18.36 -32.36 9.98 -3.18 -43.93 15 407991 1177 481764 39 442 151.1 0.53 E 407991 2 -3.90 -28.68 7.29 -3.43 -28.72 16 407991 3795 275096 39 1971 16.1 0.28 E 407991 2 -2.39 -33.52 6.76 -3.62 -32.77 17 407991 2533 607749 39 8064 408.0 0.53 E 407991 4 -17.32 -34.64 10.45 -3.56 -45.06 18 407991 2149 2957001 39 250 969.2 2.72 E 407991 2 -7.80 -25.37 8.51 -3.46 -28.12 19 407991 4426 1654732 39 5454 237.8 1.46 E 407991 4 -17.73 -33.41 11.34 -2.71 -42.51 20 407991 1831 457900 39 541 209.1 0.52 E 407991 2 -0.90 -25.76 4.57 -2.69 -24.79 21 407991 5427 335902 39 1735 46.0 0.35 E 407991 2 -7.80 -28.76 7.66 -3.28 -32.18 22 408010 2533 636525 41 5586 284.0 0.57 E 408010 4 -21.48 -31.88 14.80 -2.99 -41.54 23 408010 2142 2663844 41 317 1782.0 3.22 E 408010 2 -14.93 -18.44 9.20 -1.98 -26.15 24 408010 4175 1979856 41 5040 445.9 1.92 E 408010 4 -26.17 -35.06 21.51 -2.52 -42.24 25 408010 2377 664449 41 878 516.0 0.83 E 408010 2 -17.48 -33.11 20.80 -2.83 -32.62 26 408010 3795 183280 41 1642 32.1 0.22 E 408010 2 -23.76 -27.14 24.66 -2.12 -28.37 27 432555 2540 895530 37 7620 419.0 0.70 E 432555 4 -1.32 -30.04 5.61 -1.20 -26.95 28 432555 2727 1636707 37 65163 152.5 1.15 E 432555 4 -6.89 -38.87 8.39 -1.82 -39.18 29 432555 6748 3310167 37 3066 1612.2 2.31 E 432555 2 -2.59 -35.74 5.43 -3.13 -36.02 30 432555 0 0 37 8061 0.00 no_match 31 460141 2535 1317544 31 380 799.6 1.04 E 460141 4 -30.25 -14.38 14.31 -0.32 -30.64 32 460141 4051 2457985 31 1950 1927.2 1.86 E 460141 4 -24.67 -27.74 18.07 -0.89 -35.23 33 460141 3595 961542 31 171 886.0 0.72 E 460141 2 -28.29 -22.91 21.09 -0.27 -30.38 34 460141 2532 1301479 31 544 1206.0 1.07 E 460141 4 -24.41 -23.20 14.16 -1.38 -34.83 35 460141 4051 2627381 31 2964 2126.7 2.14 E 460141 4 -32.11 -20.70 17.14 -0.54 -36.22 36 460141 3478 1471395 31 218 682.2 1.15 E 460141 2 -24.71 -21.81 15.66 -0.63 -31.49 37 459602 2533 1362480 31 376 547.7 1.12 E 459602 4 -29.99 -15.20 15.46 -0.34 -30.07 38 459602 4204 2502025 31 1560 1650.9 2.04 E 459602 4 -13.65 -34.37 15.55 -1.75 -34.22 39 459602 3585 994163 31 175 898.0 0.86 E 459602 2 -25.94 -25.67 25.32 -1.08 -27.36 40 459602 2538 1334203 31 528 1151.7 1.17 E 459602 4 -30.90 -24.33 20.25 -0.86 -35.84 41 459602 4204 2762738 31 2808 2134.8 2.22 E 459602 4 -32.30 -22.55 20.38 -0.51 -34.98 42 459602 3481 1403169 31 226 845.2 1.01 E 459602 2 -30.01 -18.42 20.27 0.53 -27.63 43 158592 1720 369388 27 72 404.0 0.31 E 158592 3 -2.35 -25.14 4.64 -2.74 -25.59 44 158592 4181 1277404 27 144 1496.3 1.22 E 158592 4 -3.46 -26.42 4.39 -2.43 -27.91 45 158592 1959 710537 27 42 594.2 0.60 E 158592 3 -2.56 -27.83 5.23 -3.33 -28.48 46 158592 5912 1413567 27 72 1239.2 1.32 E 158592 2 -5.66 -24.89 4.55 -2.33 -28.34 47 158592 1723 383400 27 72 444.3 0.33 E 158592 3 -3.34 -25.53 4.52 -1.89 -26.24 48 158592 4181 894748 27 288 789.6 0.86 E 158592 4 -4.95 -28.87 4.89 -2.37 -31.30 49 158592 7899 1458966 27 42 2216.0 1.33 E 158592 3 -7.76 -21.00 3.87 -1.97 -26.86 50 158592 5911 1631219 27 42 2404.3 1.48 E 158592 2 -3.62 -26.01 4.65 -2.80 -27.78 51 14785 665 439897 29 2016 227.5 0.26 E 14785 4 -3.40 -30.39 5.52 -4.17 -32.45 52 14785 4032 1742569 29 744 590.0 1.25 E 14785 2 -6.40 -33.52 6.02 -4.02 -37.92 53 221646 2037 908976 16 8 1556.5 0.57 E 221646 4 -11.07 -14.90 3.30 -0.67 -23.33 54 555094 3619 201316 35 9 453.0 0.34 E 555094 3 -9.01 -35.92 5.56 -0.84 -40.21 55 555094 5997 146942 35 9 266.4 0.25 E 555094 3 -9.41 -34.12 5.37 -1.83 -40.00 EOF: ../database_link/dbgen_lig_0002.db.gz end of file encountered total minimization steps = 4376066 for debugging, time = 62.12000 solvation corrected scores: (a) 1 407991 score: -45.064 nathvy = 39 nconfs = 8064 2 407991 score: -43.927 nathvy = 39 nconfs = 6768 3 407991 score: -42.811 nathvy = 39 nconfs = 4155 4 407991 score: -42.515 nathvy = 39 nconfs = 5454 5 408010 score: -42.239 nathvy = 41 nconfs = 5040 6 408010 score: -41.543 nathvy = 41 nconfs = 5586 7 407991 score: -41.215 nathvy = 39 nconfs = 3120 8 555094 score: -40.209 nathvy = 35 nconfs = 9 9 555094 score: -39.995 nathvy = 35 nconfs = 9 10 432555 score: -39.185 nathvy = 37 nconfs = 65163 11 14785 score: -37.918 nathvy = 29 nconfs = 744 12 460141 score: -36.218 nathvy = 31 nconfs = 2964 13 432555 score: -36.023 nathvy = 37 nconfs = 3066 14 459602 score: -35.836 nathvy = 31 nconfs = 528 15 460141 score: -35.225 nathvy = 31 nconfs = 1950 16 459602 score: -34.976 nathvy = 31 nconfs = 2808 17 460141 score: -34.832 nathvy = 31 nconfs = 544 18 459602 score: -34.215 nathvy = 31 nconfs = 1560 19 407991 score: -33.496 nathvy = 39 nconfs = 3948 20 407991 score: -33.169 nathvy = 39 nconfs = 4284 21 407991 score: -32.767 nathvy = 39 nconfs = 1971 22 407991 score: -32.643 nathvy = 39 nconfs = 3741 23 408010 score: -32.619 nathvy = 41 nconfs = 878 24 14785 score: -32.452 nathvy = 29 nconfs = 2016 25 407991 score: -32.177 nathvy = 39 nconfs = 1735 26 407991 score: -31.726 nathvy = 39 nconfs = 1367 27 460141 score: -31.494 nathvy = 31 nconfs = 218 28 158592 score: -31.297 nathvy = 27 nconfs = 288 29 460141 score: -30.639 nathvy = 31 nconfs = 380 30 407991 score: -30.486 nathvy = 39 nconfs = 165 31 460141 score: -30.383 nathvy = 31 nconfs = 171 32 407991 score: -30.249 nathvy = 39 nconfs = 203 33 459602 score: -30.065 nathvy = 31 nconfs = 376 34 407991 score: -29.676 nathvy = 39 nconfs = 1561 35 407991 score: -29.315 nathvy = 39 nconfs = 343 36 407991 score: -29.258 nathvy = 39 nconfs = 222 37 407991 score: -28.721 nathvy = 39 nconfs = 442 38 158592 score: -28.483 nathvy = 27 nconfs = 42 39 408010 score: -28.372 nathvy = 41 nconfs = 1642 40 158592 score: -28.340 nathvy = 27 nconfs = 72 41 407991 score: -28.116 nathvy = 39 nconfs = 250 42 158592 score: -27.911 nathvy = 27 nconfs = 144 43 158592 score: -27.780 nathvy = 27 nconfs = 42 44 459602 score: -27.631 nathvy = 31 nconfs = 226 45 459602 score: -27.360 nathvy = 31 nconfs = 175 46 432555 score: -26.948 nathvy = 37 nconfs = 7620 47 158592 score: -26.855 nathvy = 27 nconfs = 42 48 158592 score: -26.243 nathvy = 27 nconfs = 72 49 408010 score: -26.145 nathvy = 41 nconfs = 317 50 407991 score: -26.127 nathvy = 39 nconfs = 451 51 520053 score: -25.982 nathvy = 37 nconfs = 540 52 158592 score: -25.585 nathvy = 27 nconfs = 72 53 407991 score: -24.791 nathvy = 39 nconfs = 541 54 221646 score: -23.332 nathvy = 16 nconfs = 8 Date and Time: 18-Feb-12 04:06:40 elapsed time (sec): 62.1900