usefragsph not on There are 30 ligand heavy atoms Ligand center of coords (x y z): 26.4921666666667 38.977 84.0785666666667 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1308 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 794 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 788 Number of spheres polar: 152, nonpolar: 392, out of current total: 788 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 16.49547 36.47648 29.12595 48.79361 74.19188 93.98904 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 295 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 256 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 233 Spheres center of coords (x y z): 25.6736527467811 40.61754 85.9471329613734 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.9524307723983 Final number of output spheres is: 45 Number of polar spheres: 7 Number of nonpolar spheres: 26 Number of spheres that are near neither polar nor nonpolar receptor atoms: 12 Final number of spheres that are from crystallographic ligand: 30