usefragsph not on There are 50 ligand heavy atoms Ligand center of coords (x y z): 26.8908 38.75326 85.15414 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1492 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 734 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 728 Number of spheres polar: 164, nonpolar: 312, out of current total: 728 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 16.95753 37.23600 28.76269 48.72000 75.19764 95.12283 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 294 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 250 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 50 Spheres center of coords (x y z): 26.8908 38.75326 85.15414 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 1.36883952577898 WARNING: removing a crystallographic sphere since 50>45 max spheres are present WARNING: removing a crystallographic sphere since 49>45 max spheres are present WARNING: removing a crystallographic sphere since 48>45 max spheres are present WARNING: removing a crystallographic sphere since 47>45 max spheres are present WARNING: removing a crystallographic sphere since 46>45 max spheres are present Final number of output spheres is: 45 Number of polar spheres: 5 Number of nonpolar spheres: 32 Number of spheres that are near neither polar nor nonpolar receptor atoms: 8 Final number of spheres that are from crystallographic ligand: 45