usefragsph not on
There are 41 ligand heavy atoms
Ligand center of coords (x y z): 5.77917073170732 28.6201707317073 56.7631951219512
Using crystallographic ligand as spheres for output
Starting number of spheres from sph/sph cluster 0: 2151
FINISHED READING IN FILE sph/sph CLUSTER 0 
Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 968
Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 968
Number of spheres polar: 205, nonpolar: 537, out of current total: 968
Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -3.35468 15.77607 18.94736 38.62017 46.76642 66.71293
Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 513
Number of spheres after second pass removing spheres absolutely <0.5 from each other: 457
Crystallographic spheres are present, so doing continuity based on crystallographic spheres
After continuity checking, number of spheres is: 450
Spheres center of coords (x y z): 7.08641553333333 30.3827058444444 59.9142750666667
Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8)
Average weighted-distance for final elimination is: 5.73457275984791
Final number of output spheres is: 60
Number of polar spheres: 28
Number of nonpolar spheres: 31
Number of spheres that are near neither polar nor nonpolar receptor atoms: 1
Final number of spheres that are from crystallographic ligand: 41