usefragsph not on There are 24 ligand heavy atoms Ligand center of coords (x y z): 23.156375 36.551125 7.52879166666667 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1327 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 692 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 691 Number of spheres polar: 156, nonpolar: 331, out of current total: 691 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 13.18042 33.13824 26.70814 46.53636 -2.27624 17.52033 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 395 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 342 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 292 Spheres center of coords (x y z): 24.399214109589 33.8387405136986 5.66318390410959 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.9439243215127 Final number of output spheres is: 60 Number of polar spheres: 12 Number of nonpolar spheres: 43 Number of spheres that are near neither polar nor nonpolar receptor atoms: 5 Final number of spheres that are from crystallographic ligand: 24