usefragsph not on
There are 28 ligand heavy atoms
Ligand center of coords (x y z): 1.38767857142857 8.17610714285714 -6.40846428571429
Using crystallographic ligand as spheres for output
Starting number of spheres from sph/sph cluster 0: 1223
FINISHED READING IN FILE sph/sph CLUSTER 0 
Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 753
Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 746
Number of spheres polar: 190, nonpolar: 317, out of current total: 746
Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -8.55749 10.82823 -1.82265 18.14825 -15.80902 3.50616
Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 431
Number of spheres after second pass removing spheres absolutely <0.5 from each other: 388
Crystallographic spheres are present, so doing continuity based on crystallographic spheres
After continuity checking, number of spheres is: 334
Spheres center of coords (x y z): 2.44090176646707 7.22947374251497 -6.50913967065868
Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8)
Average weighted-distance for final elimination is: 5.28273819648894
Final number of output spheres is: 60
Number of polar spheres: 13
Number of nonpolar spheres: 34
Number of spheres that are near neither polar nor nonpolar receptor atoms: 13
Final number of spheres that are from crystallographic ligand: 28