usefragsph not on There are 21 ligand heavy atoms Ligand center of coords (x y z): 27.8963333333333 36.1903333333333 8.60652380952381 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1142 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 770 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 768 Number of spheres polar: 202, nonpolar: 342, out of current total: 768 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 17.90122 37.56238 26.56530 46.15279 -1.28589 18.54400 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 299 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 251 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 210 Spheres center of coords (x y z): 27.908578 34.478295952381 7.15020057142857 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 6.07627004055381 Final number of output spheres is: 45 Number of polar spheres: 13 Number of nonpolar spheres: 22 Number of spheres that are near neither polar nor nonpolar receptor atoms: 10 Final number of spheres that are from crystallographic ligand: 21