usefragsph not on There are 20 ligand heavy atoms Ligand center of coords (x y z): -26.6219 -0.17745 -8.5269 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1157 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 783 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 780 Number of spheres polar: 212, nonpolar: 347, out of current total: 780 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -36.39050 -16.63641 -10.11403 9.82213 -18.48517 1.45566 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 452 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 392 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 311 Spheres center of coords (x y z): -27.2204132797428 -2.15360524115756 -7.31293739549839 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 6.06822493326552 Final number of output spheres is: 60 Number of polar spheres: 17 Number of nonpolar spheres: 37 Number of spheres that are near neither polar nor nonpolar receptor atoms: 6 Final number of spheres that are from crystallographic ligand: 20