usefragsph not on There are 40 ligand heavy atoms Ligand center of coords (x y z): 25.7781 37.609375 85.30465 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1238 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 672 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 667 Number of spheres polar: 178, nonpolar: 281, out of current total: 667 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 15.81704 35.76424 27.81243 47.52179 75.30820 95.25750 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 417 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 355 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 306 Spheres center of coords (x y z): 26.4002971895425 39.380224869281 86.2177887581699 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 4.93233271376849 Final number of output spheres is: 60 Number of polar spheres: 15 Number of nonpolar spheres: 36 Number of spheres that are near neither polar nor nonpolar receptor atoms: 9 Final number of spheres that are from crystallographic ligand: 40