DOCK version 3.5.54, compiled on 20120216 CPU, Date, and Time: node-1-27.c.bkslab.org 17-Feb-12 07:30:41 Solvation type: context-dependent ligand desolvation Internal Distance Clashes will be checked Receptor spheres: ../../sph/match2.sph Receptor cluster number(s): 1 Desolvation grid: ../../grids/solvmap_sev :dislim = 1.5000 maxnodes = 4 ratiom = 0.0000 minnodes = 3 :lbinsz = 0.4000 lovlap = 0.1000 sbinsz = 0.4000 sovlap = 0.1000 Input ligand: ../database_link/dbgen_lig_0002.db.gz DelPhi grid: ../../grids/rec+sph.phi vdW parms: ../../grids/vdw.parms.amb.mindock chemgrid prefix: ../../grids/chem resolution = 0.3300000 number of points = 1821948 a maximum of 1 bad contacts will be allowed for each orientation random seed = 777 natmin = 5 natmax = 100 nsav = 50000 300000 molecules may be searched in this run hydrogens always written out zooming will not be done trilinear interpolation is always done Orientation minimization: best conformation Simplex parameters: Max energy to minimize: 0.100E+16 Max step-size for translation (A): 0.20 Max step-size for euler angles: 5.00 Min energy change for restart (kcal/mol): 1.00 Energy convergence tolerance (kcal/mol): 0.10 Max number of iterations: 200 database version: 5.2 7 colors used in ligand database file 12 colors used in receptor sphere file ligand color positive 1 merged number = 1 ligand color negative 2 merged number = 2 ligand color acceptor 3 merged number = 3 ligand color donor 4 merged number = 4 ligand color ester_o 5 merged number = 5 ligand color amide_o 6 merged number = 6 ligand color neutral 7 merged number = 7 receptor color positive 1 merged number = 1 receptor color negative 2 merged number = 2 receptor color acceptor 3 merged number = 3 receptor color donor 4 merged number = 4 receptor color ester_o 5 merged number = 5 receptor color amide_o 6 merged number = 6 receptor color neutral 7 merged number = 7 receptor color not_neutral 8 merged number = 8 receptor color positive_or_donor 9 merged number = 9 receptor color negative_or_acceptor 10 merged number = 10 receptor color neutral_or_acceptor_or_donor 11 merged number = 11 receptor color donacc 12 merged number = 12 12 colors in merged ligand-sphere color table this is a run with labeled color matching: match positive negative match positive negative_or_acceptor match positive not_neutral match negative positive match negative positive_or_donor match negative not_neutral match donor acceptor match donor donacc match donor negative_or_acceptor match donor neutral_or_acceptor_or_donor match donor not_neutral match acceptor donor match acceptor donacc match acceptor positive_or_donor match acceptor neutral_or_acceptor_or_donor match acceptor not_neutral match neutral neutral match neutral neutral_or_acceptor_or_donor match ester_o donor match ester_o donacc match ester_o positive_or_donor match ester_o not_neutral match amide_o donor match amide_o donacc match amide_o positive_or_donor match amide_o not_neutral 26 chemical matches specified grid min 4.889000 18.34500 64.43200 grid max 41.88900 60.84500 103.9320 using cluster number: 1 output file: test.eel1.gz Receptor spheres: 45 0 0 0 0 0 38 non-zero colors in receptor sphere cluster cluster 1 with 45 spheres 9001 9002 9003 9004 9005 9006 9007 9008 9009 9010 9011 9012 9013 9014 9015 9016 9017 9018 9019 9020 9021 9022 9023 9024 9025 9026 9027 9028 9029 9030 9031 9032 9033 9034 9035 9036 9037 9038 9039 9040 9041 9042 9043 9044 9045 maximum receptor sphere-sphere distance 12.24758 mol# id_num matched nscored nhvy nconfs part.fcn Time E id_num nbr elect + vdW + polsol + apolsol = Total 1 520053 2220 1755573 37 540 2055.6 4.57 E 520053 4 -1.56 -29.72 6.00 -3.31 -28.59 2 407991 2533 614089 39 3741 146.2 1.31 E 407991 4 1.73 -33.41 6.09 -2.91 -28.51 3 407991 2149 2325321 39 165 355.1 6.32 E 407991 2 -7.76 -26.41 9.34 -4.22 -29.06 4 407991 4425 1730771 39 4155 1030.0 3.71 E 407991 4 -15.11 -29.77 10.60 -3.62 -37.90 5 407991 1088 460095 39 451 430.0 1.14 E 407991 2 -1.77 -25.64 4.97 -3.04 -25.48 6 407991 5427 300607 39 1367 72.7 0.74 E 407991 2 -5.22 -31.59 8.54 -3.15 -31.43 7 407991 2540 521407 39 3948 348.0 1.31 E 407991 4 -4.63 -32.68 6.98 -2.66 -33.00 8 407991 2152 2664660 39 203 330.4 6.57 E 407991 2 -5.38 -26.87 9.73 -3.64 -26.16 9 407991 2719 1429874 39 3120 1045.4 3.79 E 407991 4 -14.28 -31.27 10.12 -3.12 -38.56 10 407991 994 391785 39 343 185.5 1.17 E 407991 2 -3.00 -29.77 6.60 -2.84 -29.01 11 407991 3789 160966 39 1561 43.2 0.48 E 407991 2 -3.21 -30.50 4.92 -2.49 -31.28 12 407991 2534 572708 39 4284 392.0 1.31 E 407991 4 -3.56 -32.67 7.06 -3.00 -32.17 13 407991 2143 2714572 39 222 2276.0 6.10 E 407991 2 -3.50 -31.44 12.98 -3.59 -25.56 14 407991 4175 2056302 39 6768 1336.0 4.91 E 407991 4 -15.19 -32.67 10.05 -3.21 -41.02 15 407991 1177 490374 39 442 148.2 1.33 E 407991 2 -3.83 -28.62 7.11 -3.39 -28.72 16 407991 3795 288046 39 1971 42.3 0.72 E 407991 2 -5.42 -32.40 7.89 -3.01 -32.95 17 407991 2533 588744 39 8064 408.0 1.38 E 407991 4 -5.17 -33.91 8.18 -3.77 -34.67 18 407991 2149 2925850 39 250 1071.6 6.67 E 407991 2 -11.21 -23.40 9.71 -2.44 -27.34 19 407991 4426 1645315 39 5454 263.9 3.84 E 407991 4 -12.55 -33.72 11.65 -2.75 -37.38 20 407991 1831 454262 39 541 124.2 1.31 E 407991 2 -1.32 -24.64 4.04 -2.23 -24.15 21 407991 5427 344208 39 1735 53.7 0.90 E 407991 2 -6.21 -34.05 13.30 -3.49 -30.45 22 408010 2533 614405 41 5586 310.6 1.44 E 408010 4 -8.37 -30.25 11.15 -2.58 -30.05 23 408010 2142 2644179 41 317 505.7 7.20 E 408010 2 -10.87 -19.64 10.01 -2.08 -22.58 24 408010 4175 1970468 41 5040 584.4 4.65 E 408010 4 -12.56 -31.94 12.94 -2.82 -34.40 25 408010 2377 636164 41 878 516.0 1.79 E 408010 2 -6.29 -33.01 20.13 -2.87 -22.04 26 408010 3795 187372 41 1642 110.0 0.50 E 408010 2 -2.47 -30.74 14.33 -2.65 -21.54 27 432555 2540 850278 37 7620 247.9 1.65 E 432555 4 -2.27 -30.00 5.65 -1.06 -27.67 28 432555 2727 1609838 37 65163 143.9 2.80 E 432555 4 -7.83 -38.70 8.29 -1.72 -39.96 29 432555 6748 3254115 37 3066 2101.7 5.40 E 432555 2 -1.30 -36.88 5.66 -3.19 -35.71 30 432555 0 0 37 8061 0.00 no_match 31 460141 2535 1285489 31 380 165.7 2.84 E 460141 4 -17.12 -23.07 6.80 -0.81 -34.20 32 460141 4051 2435489 31 1950 1350.8 5.20 E 460141 4 -7.58 -35.58 10.31 -2.06 -34.91 33 460141 3595 973474 31 171 623.1 1.94 E 460141 2 -9.65 -21.17 8.10 -0.97 -23.69 34 460141 2532 1274040 31 544 1294.0 2.80 E 460141 4 -6.14 -31.82 9.90 -1.27 -29.32 35 460141 4051 2542649 31 2964 2190.7 5.45 E 460141 4 -8.68 -30.96 11.22 -2.04 -30.46 36 460141 3478 1457979 31 218 466.0 2.84 E 460141 2 -10.30 -24.35 13.33 -1.59 -22.91 37 459602 2533 1339536 31 376 687.6 2.95 E 459602 4 -16.82 -21.66 5.53 -0.55 -33.50 38 459602 4204 2523040 31 1560 1342.4 5.39 E 459602 4 -9.15 -33.75 13.02 -2.07 -31.96 39 459602 3585 996075 31 175 177.2 1.98 E 459602 2 -8.08 -24.73 13.71 -0.71 -19.81 40 459602 2538 1316541 31 528 956.9 2.88 E 459602 4 -7.58 -22.53 4.11 -0.79 -26.79 41 459602 4204 2672240 31 2808 362.9 5.71 E 459602 4 -8.58 -30.77 10.32 -1.43 -30.47 42 459602 3481 1402167 31 226 615.2 2.72 E 459602 2 -15.39 -23.82 16.35 -0.93 -23.79 43 158592 1720 364510 27 72 464.0 0.84 E 158592 3 -5.55 -22.80 4.04 -1.35 -25.65 44 158592 4181 1296759 27 144 788.4 3.36 E 158592 4 -5.01 -26.13 4.71 -2.93 -29.36 45 158592 1959 706880 27 42 621.1 1.64 E 158592 3 -2.44 -28.69 5.24 -3.35 -29.24 46 158592 5912 1352192 27 72 1380.4 3.27 E 158592 2 -3.50 -26.36 4.59 -2.69 -27.95 47 158592 1723 379176 27 72 455.3 0.87 E 158592 3 -2.03 -28.73 5.70 -2.21 -27.27 48 158592 4181 896788 27 288 777.2 2.36 E 158592 4 -4.42 -28.97 4.94 -2.37 -30.82 49 158592 7899 1471987 27 42 1610.4 3.51 E 158592 3 -7.15 -23.13 4.52 -1.07 -26.83 50 158592 5911 1583787 27 42 1455.5 3.78 E 158592 2 -4.84 -26.33 4.81 -2.85 -29.22 51 14785 665 435507 29 2016 202.9 0.68 E 14785 4 -4.14 -30.98 5.45 -4.10 -33.77 52 14785 4032 1717001 29 744 1348.5 3.26 E 14785 2 -7.08 -26.48 4.70 -2.90 -31.76 53 221646 2037 882456 16 8 1429.8 1.59 E 221646 4 -11.14 -18.11 5.04 0.28 -23.93 54 555094 3619 202969 35 9 442.5 0.93 E 555094 3 -12.60 -35.93 5.68 -0.62 -43.47 55 555094 5997 143024 35 9 265.3 0.71 E 555094 3 -6.62 -34.21 5.35 -1.88 -37.36 EOF: ../database_link/dbgen_lig_0002.db.gz end of file encountered total minimization steps = 4317614 for debugging, time = 156.4600 solvation corrected scores: (a) 1 555094 score: -43.473 nathvy = 35 nconfs = 9 2 407991 score: -41.021 nathvy = 39 nconfs = 6768 3 432555 score: -39.960 nathvy = 37 nconfs = 65163 4 407991 score: -38.563 nathvy = 39 nconfs = 3120 5 407991 score: -37.903 nathvy = 39 nconfs = 4155 6 407991 score: -37.378 nathvy = 39 nconfs = 5454 7 555094 score: -37.361 nathvy = 35 nconfs = 9 8 432555 score: -35.712 nathvy = 37 nconfs = 3066 9 460141 score: -34.907 nathvy = 31 nconfs = 1950 10 407991 score: -34.668 nathvy = 39 nconfs = 8064 11 408010 score: -34.398 nathvy = 41 nconfs = 5040 12 460141 score: -34.198 nathvy = 31 nconfs = 380 13 14785 score: -33.768 nathvy = 29 nconfs = 2016 14 459602 score: -33.500 nathvy = 31 nconfs = 376 15 407991 score: -32.996 nathvy = 39 nconfs = 3948 16 407991 score: -32.950 nathvy = 39 nconfs = 1971 17 407991 score: -32.170 nathvy = 39 nconfs = 4284 18 459602 score: -31.958 nathvy = 31 nconfs = 1560 19 14785 score: -31.761 nathvy = 29 nconfs = 744 20 407991 score: -31.428 nathvy = 39 nconfs = 1367 21 407991 score: -31.283 nathvy = 39 nconfs = 1561 22 158592 score: -30.824 nathvy = 27 nconfs = 288 23 459602 score: -30.467 nathvy = 31 nconfs = 2808 24 460141 score: -30.462 nathvy = 31 nconfs = 2964 25 407991 score: -30.452 nathvy = 39 nconfs = 1735 26 408010 score: -30.049 nathvy = 41 nconfs = 5586 27 158592 score: -29.358 nathvy = 27 nconfs = 144 28 460141 score: -29.324 nathvy = 31 nconfs = 544 29 158592 score: -29.238 nathvy = 27 nconfs = 42 30 158592 score: -29.218 nathvy = 27 nconfs = 42 31 407991 score: -29.056 nathvy = 39 nconfs = 165 32 407991 score: -29.007 nathvy = 39 nconfs = 343 33 407991 score: -28.723 nathvy = 39 nconfs = 442 34 520053 score: -28.587 nathvy = 37 nconfs = 540 35 407991 score: -28.511 nathvy = 39 nconfs = 3741 36 158592 score: -27.952 nathvy = 27 nconfs = 72 37 432555 score: -27.674 nathvy = 37 nconfs = 7620 38 407991 score: -27.335 nathvy = 39 nconfs = 250 39 158592 score: -27.267 nathvy = 27 nconfs = 72 40 158592 score: -26.832 nathvy = 27 nconfs = 42 41 459602 score: -26.790 nathvy = 31 nconfs = 528 42 407991 score: -26.155 nathvy = 39 nconfs = 203 43 158592 score: -25.649 nathvy = 27 nconfs = 72 44 407991 score: -25.563 nathvy = 39 nconfs = 222 45 407991 score: -25.478 nathvy = 39 nconfs = 451 46 407991 score: -24.149 nathvy = 39 nconfs = 541 47 221646 score: -23.929 nathvy = 16 nconfs = 8 48 459602 score: -23.793 nathvy = 31 nconfs = 226 49 460141 score: -23.689 nathvy = 31 nconfs = 171 50 460141 score: -22.911 nathvy = 31 nconfs = 218 51 408010 score: -22.578 nathvy = 41 nconfs = 317 52 408010 score: -22.041 nathvy = 41 nconfs = 878 53 408010 score: -21.537 nathvy = 41 nconfs = 1642 54 459602 score: -19.807 nathvy = 31 nconfs = 175 Date and Time: 17-Feb-12 07:33:18 elapsed time (sec): 156.5700