Distance from surface specified: 1.80 There are 30 ligand heavy atoms Ligand center of coords (x y z): 25.9416333333333 38.7035 84.261 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 12248 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (14 angstroms): 10664 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<2 angstroms): 10383 Number of spheres polar: 6116, nonpolar: 3335, out of current total: 10383 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 11.94520 39.78080 24.71060 52.69960 70.27360 98.26100 Number of spheres after removing spheres too close to each other (approximately <1.4 angstroms): 1507 Number of spheres after second pass removing spheres absolutely <0.9 from each other: 834 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 820 Spheres center of coords (x y z): 27.64005 37.1865958536585 84.9244092682925 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 10.8931641762617 Final number of output spheres is: 200 Number of polar spheres: 115 Number of nonpolar spheres: 73 Number of spheres that are near neither polar nor nonpolar receptor atoms: 12 Final number of spheres that are from crystallographic ligand: 30