DOCK version 3.5.54, compiled on 20120216 CPU, Date, and Time: node-5-33.c.bkslab.org 21-Feb-12 23:11:11 Solvation type: full ligand desolvation Internal Distance Clashes will be checked Receptor spheres: ../../sph/match2.sph Receptor cluster number(s): 1 :dislim = 1.5000 maxnodes = 4 ratiom = 0.0000 minnodes = 3 :lbinsz = 0.4000 lovlap = 0.1000 sbinsz = 0.4000 sovlap = 0.1000 Input ligand: ../database_link/dbgen_dec_0042.db.gz DelPhi grid: ../../grids/rec+sph.phi vdW parms: ../../grids/vdw.parms.amb.mindock chemgrid prefix: ../../grids/chem resolution = 0.3300000 number of points = 1821948 a maximum of 1 bad contacts will be allowed for each orientation random seed = 777 natmin = 5 natmax = 100 nsav = 50000 300000 molecules may be searched in this run hydrogens always written out zooming will not be done trilinear interpolation is always done Orientation minimization: best conformation Simplex parameters: Max energy to minimize: 0.100E+16 Max step-size for translation (A): 0.20 Max step-size for euler angles: 5.00 Min energy change for restart (kcal/mol): 1.00 Energy convergence tolerance (kcal/mol): 0.10 Max number of iterations: 200 database version: 5.2 7 colors used in ligand database file 12 colors used in receptor sphere file ligand color positive 1 merged number = 1 ligand color negative 2 merged number = 2 ligand color acceptor 3 merged number = 3 ligand color donor 4 merged number = 4 ligand color ester_o 5 merged number = 5 ligand color amide_o 6 merged number = 6 ligand color neutral 7 merged number = 7 receptor color positive 1 merged number = 1 receptor color negative 2 merged number = 2 receptor color acceptor 3 merged number = 3 receptor color donor 4 merged number = 4 receptor color ester_o 5 merged number = 5 receptor color amide_o 6 merged number = 6 receptor color neutral 7 merged number = 7 receptor color not_neutral 8 merged number = 8 receptor color positive_or_donor 9 merged number = 9 receptor color negative_or_acceptor 10 merged number = 10 receptor color neutral_or_acceptor_or_donor 11 merged number = 11 receptor color donacc 12 merged number = 12 12 colors in merged ligand-sphere color table this is a run with labeled color matching: match positive negative match positive negative_or_acceptor match positive not_neutral match negative positive match negative positive_or_donor match negative not_neutral match donor acceptor match donor donacc match donor negative_or_acceptor match donor neutral_or_acceptor_or_donor match donor not_neutral match acceptor donor match acceptor donacc match acceptor positive_or_donor match acceptor neutral_or_acceptor_or_donor match acceptor not_neutral match neutral neutral match neutral neutral_or_acceptor_or_donor match ester_o donor match ester_o donacc match ester_o positive_or_donor match ester_o not_neutral match amide_o donor match amide_o donacc match amide_o positive_or_donor match amide_o not_neutral 26 chemical matches specified grid min 4.811000 17.99700 64.24200 grid max 42.10100 60.89700 104.1720 using cluster number: 1 output file: test.eel1.gz Receptor spheres: 45 0 0 0 0 0 38 non-zero colors in receptor sphere cluster cluster 1 with 45 spheres 9001 9002 9003 9004 9005 9006 9007 9008 9009 9010 9011 9012 9013 9014 9015 9016 9017 9018 9019 9020 9021 9022 9023 9024 9025 9026 9027 9028 9029 9030 9031 9032 9033 9034 9035 9036 9037 9038 9039 9040 9041 9042 9043 9044 9045 maximum receptor sphere-sphere distance 12.24758 mol# id_num matched nscored nhvy nconfs part.fcn Time E id_num nbr elect + vdW + polsol + apolsol = Total 1 C64155873 4332 5030019 30 870 5528.0 3.40 E C64155873 2 -15.80 -28.51 40.11 -7.66 -11.86 2 C64155873 6528 5325661 30 858 3802.7 3.43 E C64155873 3 -21.77 -21.17 40.11 -7.66 -10.50 3 C64155873 4331 4891104 30 858 4246.1 3.31 E C64155873 2 -17.84 -26.64 40.11 -7.66 -12.02 4 C65252660 2599 2459692 27 5300 112.8 1.36 E C65252660 3 -8.14 -27.26 42.91 -9.32 -1.81 5 C65252660 5035 4241419 27 266 426.9 3.00 E C65252660 2 -13.83 -24.33 42.91 -9.32 -4.57 6 C65329895 3795 4189152 30 3444 3962.0 2.23 E C65329895 2 -18.10 -29.57 38.22 -11.14 -20.59 7 C65329895 4336 5300870 30 1511 4358.7 2.72 E C65329895 2 -17.11 -25.56 38.22 -11.14 -15.59 8 C65329895 3909 3043187 30 7197 2091.1 1.70 E C65329895 2 -15.44 -24.10 38.22 -11.14 -12.46 9 C67157800 7789 11749434 29 228 8375.6 7.16 E C67157800 3 -4.97 -28.12 46.81 -10.21 3.51 10 C67157800 1272 1106668 29 904 810.0 0.70 E C67157800 3 -9.37 -27.41 46.81 -10.21 -0.18 11 C67157800 2458 1858809 29 805 1253.3 1.37 E C67157800 3 -14.04 -16.99 46.81 -10.21 5.57 12 C67157800 7789 11845931 29 242 8080.0 7.31 E C67157800 3 -17.18 -19.18 46.81 -10.21 0.24 13 C67157800 1272 1219805 29 936 910.6 0.79 E C67157800 3 -9.19 -27.40 46.81 -10.21 0.02 14 C67157800 3486 2755601 29 605 2293.3 2.14 E C67157800 3 -17.39 -14.88 46.81 -10.21 4.32 15 C67157800 7789 12088928 29 372 9782.6 7.52 E C67157800 3 -12.34 -20.17 46.81 -10.21 4.10 16 C67157800 1272 1237041 29 1496 928.0 0.84 E C67157800 3 -13.52 -26.87 46.81 -10.21 -3.79 17 C67157800 2406 2325842 29 744 1507.1 1.95 E C67157800 3 -9.12 -23.73 46.81 -10.21 3.74 18 C67157800 7754 10090978 29 252 7959.7 7.04 E C67157800 3 -4.02 -28.25 46.81 -10.21 4.33 19 C67157800 4489 4142286 29 1008 4297.2 3.45 E C67157800 3 -7.35 -26.03 46.81 -10.21 3.22 20 C67157800 4489 4135545 29 1008 995.2 3.32 E C67157800 3 -12.28 -21.08 46.81 -10.21 3.24 EOF: ../database_link/dbgen_dec_0042.db.gz end of file encountered total minimization steps = 5877070 for debugging, time = 65.39999 solvation corrected scores: (a) 1 C65329895 score: -20.591 nathvy = 30 nconfs = 3444 2 C65329895 score: -15.587 nathvy = 30 nconfs = 1511 3 C65329895 score: -12.462 nathvy = 30 nconfs = 7197 4 C64155873 score: -12.024 nathvy = 30 nconfs = 858 5 C64155873 score: -11.856 nathvy = 30 nconfs = 870 6 C64155873 score: -10.496 nathvy = 30 nconfs = 858 7 C65252660 score: -4.569 nathvy = 27 nconfs = 266 8 C67157800 score: -3.790 nathvy = 29 nconfs = 1496 9 C65252660 score: -1.809 nathvy = 27 nconfs = 5300 10 C67157800 score: -0.182 nathvy = 29 nconfs = 904 11 C67157800 score: 0.019 nathvy = 29 nconfs = 936 12 C67157800 score: 0.238 nathvy = 29 nconfs = 242 13 C67157800 score: 3.219 nathvy = 29 nconfs = 1008 14 C67157800 score: 3.236 nathvy = 29 nconfs = 1008 15 C67157800 score: 3.514 nathvy = 29 nconfs = 228 16 C67157800 score: 3.745 nathvy = 29 nconfs = 744 17 C67157800 score: 4.098 nathvy = 29 nconfs = 372 18 C67157800 score: 4.324 nathvy = 29 nconfs = 605 19 C67157800 score: 4.326 nathvy = 29 nconfs = 252 20 C67157800 score: 5.567 nathvy = 29 nconfs = 805 Date and Time: 21-Feb-12 23:12:18 elapsed time (sec): 65.4200