DOCK version 3.5.54, compiled on 20120216 CPU, Date, and Time: node-6-12.c.bkslab.org 20-Feb-12 08:50:27 Solvation type: context-dependent ligand desolvation Internal Distance Clashes will be checked Receptor spheres: ../../sph/match2.sph Receptor cluster number(s): 1 Desolvation grid: ../../grids/solvmap_sev.heavy Additional hydrogen desolvation grid: ../../grids/solvmap_sev.hydrogen :dislim = 1.5000 maxnodes = 4 ratiom = 0.0000 minnodes = 3 :lbinsz = 0.4000 lovlap = 0.1000 sbinsz = 0.4000 sovlap = 0.1000 Input ligand: ../database_link/dbgen_dec_0042.db.gz DelPhi grid: ../../grids/rec+sph.phi vdW parms: ../../grids/vdw.parms.amb.mindock chemgrid prefix: ../../grids/chem resolution = 0.3300000 number of points = 1821948 a maximum of 1 bad contacts will be allowed for each orientation random seed = 777 natmin = 5 natmax = 100 nsav = 50000 300000 molecules may be searched in this run hydrogens always written out zooming will not be done trilinear interpolation is always done Orientation minimization: best conformation Simplex parameters: Max energy to minimize: 0.100E+16 Max step-size for translation (A): 0.20 Max step-size for euler angles: 5.00 Min energy change for restart (kcal/mol): 1.00 Energy convergence tolerance (kcal/mol): 0.10 Max number of iterations: 200 database version: 5.2 7 colors used in ligand database file 12 colors used in receptor sphere file ligand color positive 1 merged number = 1 ligand color negative 2 merged number = 2 ligand color acceptor 3 merged number = 3 ligand color donor 4 merged number = 4 ligand color ester_o 5 merged number = 5 ligand color amide_o 6 merged number = 6 ligand color neutral 7 merged number = 7 receptor color positive 1 merged number = 1 receptor color negative 2 merged number = 2 receptor color acceptor 3 merged number = 3 receptor color donor 4 merged number = 4 receptor color ester_o 5 merged number = 5 receptor color amide_o 6 merged number = 6 receptor color neutral 7 merged number = 7 receptor color not_neutral 8 merged number = 8 receptor color positive_or_donor 9 merged number = 9 receptor color negative_or_acceptor 10 merged number = 10 receptor color neutral_or_acceptor_or_donor 11 merged number = 11 receptor color donacc 12 merged number = 12 12 colors in merged ligand-sphere color table this is a run with labeled color matching: match positive negative match positive negative_or_acceptor match positive not_neutral match negative positive match negative positive_or_donor match negative not_neutral match donor acceptor match donor donacc match donor negative_or_acceptor match donor neutral_or_acceptor_or_donor match donor not_neutral match acceptor donor match acceptor donacc match acceptor positive_or_donor match acceptor neutral_or_acceptor_or_donor match acceptor not_neutral match neutral neutral match neutral neutral_or_acceptor_or_donor match ester_o donor match ester_o donacc match ester_o positive_or_donor match ester_o not_neutral match amide_o donor match amide_o donacc match amide_o positive_or_donor match amide_o not_neutral 26 chemical matches specified grid min 4.889000 18.34500 64.43200 grid max 41.88900 60.84500 103.9320 using cluster number: 1 output file: test.eel1.gz Receptor spheres: 45 0 0 0 0 0 38 non-zero colors in receptor sphere cluster cluster 1 with 45 spheres 9001 9002 9003 9004 9005 9006 9007 9008 9009 9010 9011 9012 9013 9014 9015 9016 9017 9018 9019 9020 9021 9022 9023 9024 9025 9026 9027 9028 9029 9030 9031 9032 9033 9034 9035 9036 9037 9038 9039 9040 9041 9042 9043 9044 9045 maximum receptor sphere-sphere distance 12.24758 mol# id_num matched nscored nhvy nconfs part.fcn Time E id_num nbr elect + vdW + polsol + apolsol = Total 1 C64155873 4332 5015324 30 870 3373.7 7.76 E C64155873 2 -7.86 -26.61 2.95 -2.75 -34.29 2 C64155873 6528 5255913 30 858 5571.3 7.86 E C64155873 3 -7.19 -30.81 4.42 -3.48 -37.06 3 C64155873 4331 4898376 30 858 4246.0 7.80 E C64155873 2 -17.25 -27.47 9.74 -2.35 -37.33 4 C65252660 2599 2502792 27 5300 106.3 3.02 E C65252660 3 -8.33 -27.90 1.29 -3.19 -38.13 5 C65252660 5035 4249978 27 266 4275.0 6.74 E C65252660 2 -15.27 -20.59 2.24 -2.56 -36.18 6 C65329895 3795 4097876 30 3444 3962.4 5.06 E C65329895 2 -17.58 -30.31 11.79 -4.09 -40.18 7 C65329895 4336 5344627 30 1511 2543.5 6.48 E C65329895 2 -9.18 -28.39 4.23 -4.33 -37.67 8 C65329895 3909 3097066 30 7197 739.0 3.82 E C65329895 2 -9.27 -29.78 5.80 -4.41 -37.67 9 C67157800 7789 11570783 29 228 3380.7 15.94 E C67157800 3 -4.57 -27.62 3.34 -3.99 -32.84 10 C67157800 1272 1129183 29 904 378.4 1.55 E C67157800 3 -13.31 -27.11 8.28 -1.72 -33.87 11 C67157800 2458 1916184 29 805 1044.0 3.04 E C67157800 3 -11.55 -21.78 3.78 -2.04 -31.59 12 C67157800 7789 11659414 29 242 8176.9 15.88 E C67157800 3 -16.87 -19.53 3.91 -1.83 -34.32 13 C67157800 1272 1245703 29 936 895.1 1.73 E C67157800 3 -10.76 -25.33 7.58 -2.53 -31.04 14 C67157800 3486 2942017 29 605 370.6 4.71 E C67157800 3 -9.10 -20.20 0.96 -1.66 -30.00 15 C67157800 7789 11877103 29 372 9679.6 16.79 E C67157800 3 -12.50 -20.11 3.29 -2.84 -32.16 16 C67157800 1272 1240539 29 1496 931.6 1.73 E C67157800 3 -13.27 -26.91 8.22 -2.69 -34.65 17 C67157800 2406 2495269 29 744 451.1 4.13 E C67157800 3 -11.82 -22.32 5.76 -1.61 -29.99 18 C67157800 7754 9878654 29 252 7341.5 15.06 E C67157800 3 -4.46 -24.63 0.94 -3.18 -31.33 19 C67157800 4489 4257096 29 1008 3400.0 7.05 E C67157800 3 -7.52 -25.96 4.42 -1.87 -30.92 20 C67157800 4489 4277403 29 1008 3093.8 7.03 E C67157800 3 -6.18 -26.50 3.99 -1.80 -30.48 EOF: ../database_link/dbgen_dec_0042.db.gz end of file encountered total minimization steps = 5871513 for debugging, time = 144.7100 solvation corrected scores: (a) 1 C65329895 score: -40.182 nathvy = 30 nconfs = 3444 2 C65252660 score: -38.126 nathvy = 27 nconfs = 5300 3 C65329895 score: -37.673 nathvy = 30 nconfs = 1511 4 C65329895 score: -37.668 nathvy = 30 nconfs = 7197 5 C64155873 score: -37.332 nathvy = 30 nconfs = 858 6 C64155873 score: -37.065 nathvy = 30 nconfs = 858 7 C65252660 score: -36.175 nathvy = 27 nconfs = 266 8 C67157800 score: -34.648 nathvy = 29 nconfs = 1496 9 C67157800 score: -34.322 nathvy = 29 nconfs = 242 10 C64155873 score: -34.286 nathvy = 30 nconfs = 870 11 C67157800 score: -33.869 nathvy = 29 nconfs = 904 12 C67157800 score: -32.840 nathvy = 29 nconfs = 228 13 C67157800 score: -32.158 nathvy = 29 nconfs = 372 14 C67157800 score: -31.591 nathvy = 29 nconfs = 805 15 C67157800 score: -31.328 nathvy = 29 nconfs = 252 16 C67157800 score: -31.040 nathvy = 29 nconfs = 936 17 C67157800 score: -30.919 nathvy = 29 nconfs = 1008 18 C67157800 score: -30.485 nathvy = 29 nconfs = 1008 19 C67157800 score: -30.003 nathvy = 29 nconfs = 605 20 C67157800 score: -29.988 nathvy = 29 nconfs = 744 Date and Time: 20-Feb-12 08:52:53 elapsed time (sec): 144.7600