DOCK version 3.5.54, compiled on 20120216 CPU, Date, and Time: node-6-07.c.bkslab.org 20-Feb-12 08:51:13 Solvation type: context-dependent ligand desolvation Internal Distance Clashes will be checked Receptor spheres: ../../sph/match2.sph Receptor cluster number(s): 1 Desolvation grid: ../../grids/solvmap_sev.heavy Additional hydrogen desolvation grid: ../../grids/solvmap_sev.hydrogen :dislim = 1.5000 maxnodes = 4 ratiom = 0.0000 minnodes = 3 :lbinsz = 0.4000 lovlap = 0.1000 sbinsz = 0.4000 sovlap = 0.1000 Input ligand: ../database_link/dbgen_lig_0002.db.gz DelPhi grid: ../../grids/rec+sph.phi vdW parms: ../../grids/vdw.parms.amb.mindock chemgrid prefix: ../../grids/chem resolution = 0.3300000 number of points = 1821948 a maximum of 1 bad contacts will be allowed for each orientation random seed = 777 natmin = 5 natmax = 100 nsav = 50000 300000 molecules may be searched in this run hydrogens always written out zooming will not be done trilinear interpolation is always done Orientation minimization: best conformation Simplex parameters: Max energy to minimize: 0.100E+16 Max step-size for translation (A): 0.20 Max step-size for euler angles: 5.00 Min energy change for restart (kcal/mol): 1.00 Energy convergence tolerance (kcal/mol): 0.10 Max number of iterations: 200 database version: 5.2 7 colors used in ligand database file 12 colors used in receptor sphere file ligand color positive 1 merged number = 1 ligand color negative 2 merged number = 2 ligand color acceptor 3 merged number = 3 ligand color donor 4 merged number = 4 ligand color ester_o 5 merged number = 5 ligand color amide_o 6 merged number = 6 ligand color neutral 7 merged number = 7 receptor color positive 1 merged number = 1 receptor color negative 2 merged number = 2 receptor color acceptor 3 merged number = 3 receptor color donor 4 merged number = 4 receptor color ester_o 5 merged number = 5 receptor color amide_o 6 merged number = 6 receptor color neutral 7 merged number = 7 receptor color not_neutral 8 merged number = 8 receptor color positive_or_donor 9 merged number = 9 receptor color negative_or_acceptor 10 merged number = 10 receptor color neutral_or_acceptor_or_donor 11 merged number = 11 receptor color donacc 12 merged number = 12 12 colors in merged ligand-sphere color table this is a run with labeled color matching: match positive negative match positive negative_or_acceptor match positive not_neutral match negative positive match negative positive_or_donor match negative not_neutral match donor acceptor match donor donacc match donor negative_or_acceptor match donor neutral_or_acceptor_or_donor match donor not_neutral match acceptor donor match acceptor donacc match acceptor positive_or_donor match acceptor neutral_or_acceptor_or_donor match acceptor not_neutral match neutral neutral match neutral neutral_or_acceptor_or_donor match ester_o donor match ester_o donacc match ester_o positive_or_donor match ester_o not_neutral match amide_o donor match amide_o donacc match amide_o positive_or_donor match amide_o not_neutral 26 chemical matches specified grid min 4.889000 18.34500 64.43200 grid max 41.88900 60.84500 103.9320 using cluster number: 1 output file: test.eel1.gz Receptor spheres: 45 0 0 0 0 0 38 non-zero colors in receptor sphere cluster cluster 1 with 45 spheres 9001 9002 9003 9004 9005 9006 9007 9008 9009 9010 9011 9012 9013 9014 9015 9016 9017 9018 9019 9020 9021 9022 9023 9024 9025 9026 9027 9028 9029 9030 9031 9032 9033 9034 9035 9036 9037 9038 9039 9040 9041 9042 9043 9044 9045 maximum receptor sphere-sphere distance 12.24758 mol# id_num matched nscored nhvy nconfs part.fcn Time E id_num nbr elect + vdW + polsol + apolsol = Total 1 520053 2220 1742636 37 540 1790.0 2.57 E 520053 4 -1.44 -25.08 8.99 -3.07 -20.60 2 407991 2533 607170 39 3741 162.0 0.75 E 407991 4 -3.68 -29.81 2.68 -3.31 -34.12 3 407991 2149 2341324 39 165 352.0 3.85 E 407991 2 -9.37 -26.93 3.39 -4.49 -37.40 4 407991 4425 1725024 39 4155 1030.0 2.15 E 407991 4 -15.38 -30.57 6.20 -3.31 -43.06 5 407991 1088 482880 39 451 163.7 0.73 E 407991 2 -3.05 -28.42 3.65 -3.08 -30.90 6 407991 5427 298601 39 1367 64.1 0.45 E 407991 2 -3.55 -30.78 1.80 -3.32 -35.84 7 407991 2540 513181 39 3948 348.0 0.77 E 407991 4 -4.99 -32.24 3.37 -2.68 -36.53 8 407991 2152 2632679 39 203 1962.9 3.99 E 407991 2 -12.34 -22.97 5.66 -1.51 -31.16 9 407991 2719 1437687 39 3120 925.1 2.23 E 407991 4 -12.61 -29.77 5.79 -2.88 -39.47 10 407991 994 400853 39 343 331.8 0.73 E 407991 2 -3.33 -27.64 2.54 -2.64 -31.07 11 407991 3789 161668 39 1561 44.9 0.29 E 407991 2 -4.62 -30.15 1.92 -2.85 -35.71 12 407991 2534 575596 39 4284 119.6 0.78 E 407991 4 0.88 -34.16 1.40 -2.82 -34.70 13 407991 2143 2682838 39 222 1340.5 3.70 E 407991 2 -8.68 -25.27 6.05 -3.07 -30.97 14 407991 4175 2067632 39 6768 1336.0 2.86 E 407991 4 -15.13 -33.18 5.64 -2.96 -45.63 15 407991 1177 493590 39 442 276.6 0.81 E 407991 2 -3.82 -28.66 2.46 -3.17 -33.18 16 407991 3795 288096 39 1971 39.3 0.42 E 407991 2 -2.58 -33.26 1.96 -3.33 -37.21 17 407991 2533 577419 39 8064 214.9 0.79 E 407991 4 -5.80 -31.32 3.02 -2.69 -36.79 18 407991 2149 2871383 39 250 1058.5 4.00 E 407991 2 -8.73 -26.67 6.05 -3.38 -32.72 19 407991 4426 1650483 39 5454 235.8 2.21 E 407991 4 -12.47 -33.87 6.30 -2.67 -42.70 20 407991 1831 466327 39 541 290.5 0.82 E 407991 2 -0.69 -25.87 0.92 -1.93 -27.58 21 407991 5427 340682 39 1735 34.4 0.54 E 407991 2 -6.76 -30.88 3.64 -2.96 -36.97 22 408010 2533 624771 41 5586 292.0 0.87 E 408010 4 -13.38 -29.98 5.68 -2.50 -40.18 23 408010 2142 2570457 41 317 1855.3 4.34 E 408010 2 -4.69 -29.56 5.24 -2.37 -31.38 24 408010 4175 1979533 41 5040 345.2 2.75 E 408010 4 -16.71 -31.72 5.95 -2.70 -45.18 25 408010 2377 640797 41 878 516.0 1.13 E 408010 2 -6.95 -31.49 8.51 -2.56 -32.49 26 408010 3795 182796 41 1642 110.0 0.29 E 408010 2 -2.55 -31.20 5.60 -2.61 -30.76 27 432555 2540 876490 37 7620 375.9 0.98 E 432555 4 -7.61 -24.18 5.98 0.34 -25.47 28 432555 2727 1640169 37 65163 130.0 1.63 E 432555 4 -7.70 -38.89 8.47 -2.06 -40.19 29 432555 6748 3297957 37 3066 1298.8 3.22 E 432555 2 -1.05 -36.85 5.38 -2.69 -35.21 30 432555 0 0 37 8061 0.00 no_match 31 460141 2535 1303817 31 380 232.0 1.61 E 460141 4 -18.55 -22.82 1.01 -1.00 -41.37 32 460141 4051 2411642 31 1950 1516.6 2.87 E 460141 4 -10.27 -34.93 3.63 -2.15 -43.71 33 460141 3595 952017 31 171 178.9 1.09 E 460141 2 -7.95 -24.59 3.03 -1.24 -30.75 34 460141 2532 1265160 31 544 387.8 1.57 E 460141 4 -7.21 -32.11 2.31 -1.44 -38.45 35 460141 4051 2557913 31 2964 2597.1 3.06 E 460141 4 -14.13 -34.97 9.40 -1.88 -41.57 36 460141 3478 1459476 31 218 618.3 1.60 E 460141 2 -12.55 -24.79 7.57 -1.90 -31.67 37 459602 2533 1343720 31 376 38.8 1.67 E 459602 4 -18.02 -23.49 0.26 -0.86 -42.11 38 459602 4204 2485864 31 1560 2432.0 2.94 E 459602 4 -10.55 -34.80 4.91 -2.30 -42.74 39 459602 3585 982104 31 175 744.0 1.12 E 459602 2 -8.00 -29.50 8.18 -1.10 -30.41 40 459602 2538 1319925 31 528 1143.4 1.63 E 459602 4 -10.63 -32.18 9.38 -1.51 -34.93 41 459602 4204 2680853 31 2808 2701.4 3.14 E 459602 4 -14.24 -34.64 10.61 -1.99 -40.26 42 459602 3481 1386985 31 226 748.7 1.49 E 459602 2 -10.34 -22.17 1.89 -1.06 -31.68 43 158592 1720 361186 27 72 372.9 0.45 E 158592 3 -6.73 -22.07 4.38 -1.70 -26.13 44 158592 4181 1299574 27 144 1468.7 1.82 E 158592 4 -6.87 -23.72 3.46 -2.43 -29.57 45 158592 1959 698879 27 42 588.2 0.89 E 158592 3 -2.61 -28.69 4.58 -3.13 -29.86 46 158592 5912 1346346 27 72 1338.5 1.84 E 158592 2 -4.78 -26.11 4.50 -2.63 -29.01 47 158592 1723 379884 27 72 454.7 0.48 E 158592 3 -2.48 -28.35 5.33 -2.16 -27.67 48 158592 4181 874683 27 288 780.2 1.26 E 158592 4 -4.23 -28.95 4.53 -2.29 -30.94 49 158592 7899 1479790 27 42 2216.0 1.97 E 158592 3 -7.57 -24.24 4.04 -2.01 -29.77 50 158592 5911 1582021 27 42 1491.4 2.12 E 158592 2 -4.69 -26.18 4.57 -2.64 -28.94 51 14785 665 438677 29 2016 204.1 0.38 E 14785 4 -4.31 -30.10 5.54 -4.16 -33.05 52 14785 4032 1760004 29 744 1362.5 1.96 E 14785 2 -7.21 -26.62 4.64 -2.50 -31.69 53 221646 2037 890176 16 8 1228.1 0.85 E 221646 4 -11.15 -17.97 4.76 0.26 -24.10 54 555094 3619 208270 35 9 505.9 0.55 E 555094 3 -12.90 -35.71 5.36 -0.96 -44.22 55 555094 5997 151607 35 9 283.7 0.41 E 555094 3 -6.49 -34.45 5.24 -2.16 -37.85 EOF: ../database_link/dbgen_lig_0002.db.gz end of file encountered total minimization steps = 4310627 for debugging, time = 91.07999 solvation corrected scores: (a) 1 407991 score: -45.633 nathvy = 39 nconfs = 6768 2 408010 score: -45.178 nathvy = 41 nconfs = 5040 3 555094 score: -44.217 nathvy = 35 nconfs = 9 4 460141 score: -43.713 nathvy = 31 nconfs = 1950 5 407991 score: -43.060 nathvy = 39 nconfs = 4155 6 459602 score: -42.739 nathvy = 31 nconfs = 1560 7 407991 score: -42.701 nathvy = 39 nconfs = 5454 8 459602 score: -42.107 nathvy = 31 nconfs = 376 9 460141 score: -41.572 nathvy = 31 nconfs = 2964 10 460141 score: -41.373 nathvy = 31 nconfs = 380 11 459602 score: -40.259 nathvy = 31 nconfs = 2808 12 432555 score: -40.188 nathvy = 37 nconfs = 65163 13 408010 score: -40.184 nathvy = 41 nconfs = 5586 14 407991 score: -39.467 nathvy = 39 nconfs = 3120 15 460141 score: -38.447 nathvy = 31 nconfs = 544 16 555094 score: -37.851 nathvy = 35 nconfs = 9 17 407991 score: -37.404 nathvy = 39 nconfs = 165 18 407991 score: -37.210 nathvy = 39 nconfs = 1971 19 407991 score: -36.967 nathvy = 39 nconfs = 1735 20 407991 score: -36.790 nathvy = 39 nconfs = 8064 21 407991 score: -36.533 nathvy = 39 nconfs = 3948 22 407991 score: -35.845 nathvy = 39 nconfs = 1367 23 407991 score: -35.705 nathvy = 39 nconfs = 1561 24 432555 score: -35.211 nathvy = 37 nconfs = 3066 25 459602 score: -34.932 nathvy = 31 nconfs = 528 26 407991 score: -34.703 nathvy = 39 nconfs = 4284 27 407991 score: -34.119 nathvy = 39 nconfs = 3741 28 407991 score: -33.183 nathvy = 39 nconfs = 442 29 14785 score: -33.045 nathvy = 29 nconfs = 2016 30 407991 score: -32.719 nathvy = 39 nconfs = 250 31 408010 score: -32.492 nathvy = 41 nconfs = 878 32 14785 score: -31.688 nathvy = 29 nconfs = 744 33 459602 score: -31.679 nathvy = 31 nconfs = 226 34 460141 score: -31.667 nathvy = 31 nconfs = 218 35 408010 score: -31.378 nathvy = 41 nconfs = 317 36 407991 score: -31.161 nathvy = 39 nconfs = 203 37 407991 score: -31.069 nathvy = 39 nconfs = 343 38 407991 score: -30.972 nathvy = 39 nconfs = 222 39 158592 score: -30.940 nathvy = 27 nconfs = 288 40 407991 score: -30.900 nathvy = 39 nconfs = 451 41 408010 score: -30.758 nathvy = 41 nconfs = 1642 42 460141 score: -30.752 nathvy = 31 nconfs = 171 43 459602 score: -30.414 nathvy = 31 nconfs = 175 44 158592 score: -29.856 nathvy = 27 nconfs = 42 45 158592 score: -29.773 nathvy = 27 nconfs = 42 46 158592 score: -29.570 nathvy = 27 nconfs = 144 47 158592 score: -29.010 nathvy = 27 nconfs = 72 48 158592 score: -28.942 nathvy = 27 nconfs = 42 49 158592 score: -27.667 nathvy = 27 nconfs = 72 50 407991 score: -27.577 nathvy = 39 nconfs = 541 51 158592 score: -26.129 nathvy = 27 nconfs = 72 52 432555 score: -25.470 nathvy = 37 nconfs = 7620 53 221646 score: -24.096 nathvy = 16 nconfs = 8 54 520053 score: -20.599 nathvy = 37 nconfs = 540 Date and Time: 20-Feb-12 08:52:58 elapsed time (sec): 91.1700