DOCK version 3.5.54, compiled on 20120216 CPU, Date, and Time: node-6-07.c.bkslab.org 28-Feb-12 19:36:25 Solvation type: context-dependent ligand desolvation Internal Distance Clashes will be checked Receptor spheres: ../../sph/match2.sph Receptor cluster number(s): 1 Desolvation grid: ../../grids/solvmap_sev :dislim = 1.5000 maxnodes = 4 ratiom = 0.0000 minnodes = 3 :lbinsz = 0.4000 lovlap = 0.1000 sbinsz = 0.4000 sovlap = 0.1000 Input ligand: ../database_link/dbgen_dec_0042.db.gz DelPhi grid: ../../grids/rec+sph_thinner.phi vdW parms: ../../grids/vdw.parms.amb.mindock chemgrid prefix: ../../grids/chem resolution = 0.3300000 number of points = 1821948 a maximum of 1 bad contacts will be allowed for each orientation random seed = 777 natmin = 5 natmax = 100 nsav = 50000 300000 molecules may be searched in this run hydrogens always written out zooming will not be done trilinear interpolation is always done Orientation minimization: best conformation Simplex parameters: Max energy to minimize: 0.100E+16 Max step-size for translation (A): 0.20 Max step-size for euler angles: 5.00 Min energy change for restart (kcal/mol): 1.00 Energy convergence tolerance (kcal/mol): 0.10 Max number of iterations: 1000 database version: 5.2 7 colors used in ligand database file 12 colors used in receptor sphere file ligand color positive 1 merged number = 1 ligand color negative 2 merged number = 2 ligand color acceptor 3 merged number = 3 ligand color donor 4 merged number = 4 ligand color ester_o 5 merged number = 5 ligand color amide_o 6 merged number = 6 ligand color neutral 7 merged number = 7 receptor color positive 1 merged number = 1 receptor color negative 2 merged number = 2 receptor color acceptor 3 merged number = 3 receptor color donor 4 merged number = 4 receptor color ester_o 5 merged number = 5 receptor color amide_o 6 merged number = 6 receptor color neutral 7 merged number = 7 receptor color not_neutral 8 merged number = 8 receptor color positive_or_donor 9 merged number = 9 receptor color negative_or_acceptor 10 merged number = 10 receptor color neutral_or_acceptor_or_donor 11 merged number = 11 receptor color donacc 12 merged number = 12 12 colors in merged ligand-sphere color table this is a run with labeled color matching: match positive negative match positive negative_or_acceptor match positive not_neutral match negative positive match negative positive_or_donor match negative not_neutral match donor acceptor match donor donacc match donor negative_or_acceptor match donor neutral_or_acceptor_or_donor match donor not_neutral match acceptor donor match acceptor donacc match acceptor positive_or_donor match acceptor neutral_or_acceptor_or_donor match acceptor not_neutral match neutral neutral match neutral neutral_or_acceptor_or_donor match ester_o donor match ester_o donacc match ester_o positive_or_donor match ester_o not_neutral match amide_o donor match amide_o donacc match amide_o positive_or_donor match amide_o not_neutral 26 chemical matches specified grid min 4.889000 18.34500 64.43200 grid max 41.88900 60.84500 103.9320 using cluster number: 1 output file: test.eel1.gz Receptor spheres: 45 0 0 0 0 0 38 non-zero colors in receptor sphere cluster cluster 1 with 45 spheres 9001 9002 9003 9004 9005 9006 9007 9008 9009 9010 9011 9012 9013 9014 9015 9016 9017 9018 9019 9020 9021 9022 9023 9024 9025 9026 9027 9028 9029 9030 9031 9032 9033 9034 9035 9036 9037 9038 9039 9040 9041 9042 9043 9044 9045 maximum receptor sphere-sphere distance 12.24758 mol# id_num matched nscored nhvy nconfs part.fcn Time E id_num nbr elect + vdW + polsol + apolsol = Total 1 C64155873 4332 5405590 30 870 5784.2 8.83 E C64155873 2 -18.35 -28.43 17.08 -2.27 -31.96 2 C64155873 6528 5904305 30 858 3074.1 9.05 E C64155873 3 -19.78 -23.75 9.22 -2.36 -36.66 3 C64155873 4331 5202001 30 858 4283.4 8.59 E C64155873 2 -20.46 -25.78 14.82 -1.74 -33.16 4 C65252660 2599 2960893 27 5300 1461.8 3.70 E C65252660 3 -22.46 -22.11 11.57 -2.91 -35.91 5 C65252660 5035 4706458 27 266 2782.9 7.92 E C65252660 2 -19.83 -22.26 8.33 -2.55 -36.31 6 C65329895 3795 4482459 30 3444 2083.2 5.71 E C65329895 2 -20.61 -27.38 12.51 -3.39 -38.86 7 C65329895 4336 5627250 30 1511 5074.9 7.12 E C65329895 2 -23.43 -19.86 11.12 -2.28 -34.45 8 C65329895 3909 3380532 30 7197 1830.9 4.39 E C65329895 2 -11.68 -29.43 11.53 -4.30 -33.88 9 C67157800 7789 13547587 29 228 10133.1 19.55 E C67157800 3 -15.06 -20.88 8.89 -2.61 -29.66 10 C67157800 1272 1383204 29 904 713.5 1.99 E C67157800 3 -14.72 -22.79 11.22 -1.39 -27.68 11 C67157800 2458 2267052 29 805 1383.3 3.75 E C67157800 3 -15.82 -19.08 9.36 -0.63 -26.17 12 C67157800 7789 13633758 29 242 9866.3 19.58 E C67157800 3 -12.94 -19.98 6.48 -3.45 -29.89 13 C67157800 1272 1558267 29 936 568.6 2.24 E C67157800 3 -12.90 -21.76 10.36 -3.23 -27.53 14 C67157800 3486 3436628 29 605 1186.9 5.81 E C67157800 3 -19.20 -19.25 11.19 -2.33 -29.60 15 C67157800 7789 13785882 29 372 9686.6 20.40 E C67157800 3 -15.99 -18.89 7.42 -3.09 -30.55 16 C67157800 1272 1584036 29 1496 1088.0 2.30 E C67157800 3 -18.49 -18.74 9.15 -2.06 -30.14 17 C67157800 2406 2842898 29 744 953.3 4.93 E C67157800 3 -12.77 -21.87 11.92 -2.38 -25.11 18 C67157800 7754 11599635 29 252 8114.0 18.39 E C67157800 3 -15.73 -22.15 10.94 -3.28 -30.21 19 C67157800 4489 5020772 29 1008 1985.3 8.76 E C67157800 3 -11.36 -26.34 10.51 -1.94 -29.12 20 C67157800 4489 5120767 29 1008 1557.0 8.91 E C67157800 3 -18.81 -21.03 11.71 -0.64 -28.78 EOF: ../database_link/dbgen_dec_0042.db.gz end of file encountered total minimization steps = 6843276 for debugging, time = 173.2800 solvation corrected scores: (a) 1 C65329895 score: -38.863 nathvy = 30 nconfs = 3444 2 C64155873 score: -36.661 nathvy = 30 nconfs = 858 3 C65252660 score: -36.312 nathvy = 27 nconfs = 266 4 C65252660 score: -35.915 nathvy = 27 nconfs = 5300 5 C65329895 score: -34.449 nathvy = 30 nconfs = 1511 6 C65329895 score: -33.876 nathvy = 30 nconfs = 7197 7 C64155873 score: -33.162 nathvy = 30 nconfs = 858 8 C64155873 score: -31.965 nathvy = 30 nconfs = 870 9 C67157800 score: -30.552 nathvy = 29 nconfs = 372 10 C67157800 score: -30.215 nathvy = 29 nconfs = 252 11 C67157800 score: -30.137 nathvy = 29 nconfs = 1496 12 C67157800 score: -29.891 nathvy = 29 nconfs = 242 13 C67157800 score: -29.661 nathvy = 29 nconfs = 228 14 C67157800 score: -29.599 nathvy = 29 nconfs = 605 15 C67157800 score: -29.124 nathvy = 29 nconfs = 1008 16 C67157800 score: -28.777 nathvy = 29 nconfs = 1008 17 C67157800 score: -27.683 nathvy = 29 nconfs = 904 18 C67157800 score: -27.534 nathvy = 29 nconfs = 936 19 C67157800 score: -26.167 nathvy = 29 nconfs = 805 20 C67157800 score: -25.110 nathvy = 29 nconfs = 744 Date and Time: 28-Feb-12 19:39:19 elapsed time (sec): 173.3200