DOCK version 3.5.54, compiled on 20120216 CPU, Date, and Time: node-6-07.c.bkslab.org 28-Feb-12 19:36:42 Solvation type: context-dependent ligand desolvation Internal Distance Clashes will be checked Receptor spheres: ../../sph/match2.sph Receptor cluster number(s): 1 Desolvation grid: ../../grids/solvmap_sev :dislim = 1.5000 maxnodes = 4 ratiom = 0.0000 minnodes = 3 :lbinsz = 0.4000 lovlap = 0.1000 sbinsz = 0.4000 sovlap = 0.1000 Input ligand: ../database_link/dbgen_lig_0002.db.gz DelPhi grid: ../../grids/rec+sph_thinner.phi vdW parms: ../../grids/vdw.parms.amb.mindock chemgrid prefix: ../../grids/chem resolution = 0.3300000 number of points = 1821948 a maximum of 1 bad contacts will be allowed for each orientation random seed = 777 natmin = 5 natmax = 100 nsav = 50000 300000 molecules may be searched in this run hydrogens always written out zooming will not be done trilinear interpolation is always done Orientation minimization: best conformation Simplex parameters: Max energy to minimize: 0.100E+16 Max step-size for translation (A): 0.20 Max step-size for euler angles: 5.00 Min energy change for restart (kcal/mol): 1.00 Energy convergence tolerance (kcal/mol): 0.10 Max number of iterations: 1000 database version: 5.2 7 colors used in ligand database file 12 colors used in receptor sphere file ligand color positive 1 merged number = 1 ligand color negative 2 merged number = 2 ligand color acceptor 3 merged number = 3 ligand color donor 4 merged number = 4 ligand color ester_o 5 merged number = 5 ligand color amide_o 6 merged number = 6 ligand color neutral 7 merged number = 7 receptor color positive 1 merged number = 1 receptor color negative 2 merged number = 2 receptor color acceptor 3 merged number = 3 receptor color donor 4 merged number = 4 receptor color ester_o 5 merged number = 5 receptor color amide_o 6 merged number = 6 receptor color neutral 7 merged number = 7 receptor color not_neutral 8 merged number = 8 receptor color positive_or_donor 9 merged number = 9 receptor color negative_or_acceptor 10 merged number = 10 receptor color neutral_or_acceptor_or_donor 11 merged number = 11 receptor color donacc 12 merged number = 12 12 colors in merged ligand-sphere color table this is a run with labeled color matching: match positive negative match positive negative_or_acceptor match positive not_neutral match negative positive match negative positive_or_donor match negative not_neutral match donor acceptor match donor donacc match donor negative_or_acceptor match donor neutral_or_acceptor_or_donor match donor not_neutral match acceptor donor match acceptor donacc match acceptor positive_or_donor match acceptor neutral_or_acceptor_or_donor match acceptor not_neutral match neutral neutral match neutral neutral_or_acceptor_or_donor match ester_o donor match ester_o donacc match ester_o positive_or_donor match ester_o not_neutral match amide_o donor match amide_o donacc match amide_o positive_or_donor match amide_o not_neutral 26 chemical matches specified grid min 4.889000 18.34500 64.43200 grid max 41.88900 60.84500 103.9320 using cluster number: 1 output file: test.eel1.gz Receptor spheres: 45 0 0 0 0 0 38 non-zero colors in receptor sphere cluster cluster 1 with 45 spheres 9001 9002 9003 9004 9005 9006 9007 9008 9009 9010 9011 9012 9013 9014 9015 9016 9017 9018 9019 9020 9021 9022 9023 9024 9025 9026 9027 9028 9029 9030 9031 9032 9033 9034 9035 9036 9037 9038 9039 9040 9041 9042 9043 9044 9045 maximum receptor sphere-sphere distance 12.24758 mol# id_num matched nscored nhvy nconfs part.fcn Time E id_num nbr elect + vdW + polsol + apolsol = Total 1 520053 2220 1925745 37 540 775.3 3.01 E 520053 4 -3.53 -26.22 3.30 -3.30 -29.75 2 407991 2533 819855 39 3741 320.1 1.01 E 407991 4 -15.47 -25.76 10.68 -2.80 -33.34 3 407991 2149 2576018 39 165 800.6 4.57 E 407991 2 -8.76 -26.54 9.92 -4.62 -30.00 4 407991 4425 2211342 39 4155 475.1 2.79 E 407991 4 -20.07 -31.75 11.93 -3.04 -42.92 5 407991 1088 499813 39 451 306.6 0.82 E 407991 2 -8.49 -23.34 8.64 -3.31 -26.51 6 407991 5427 377922 39 1367 39.1 0.54 E 407991 2 -1.89 -33.32 6.76 -3.59 -32.05 7 407991 2540 708844 39 3948 346.4 1.04 E 407991 4 -11.00 -29.54 10.27 -3.24 -33.50 8 407991 2152 2903386 39 203 2027.9 4.74 E 407991 2 -17.38 -22.93 13.49 -2.67 -29.48 9 407991 2719 1628640 39 3120 1045.7 2.63 E 407991 4 -18.47 -30.80 10.15 -3.15 -42.27 10 407991 994 443189 39 343 296.5 0.85 E 407991 2 -3.67 -27.92 4.66 -2.39 -29.32 11 407991 3789 172657 39 1561 42.0 0.32 E 407991 2 -4.86 -30.21 4.93 -2.54 -32.69 12 407991 2534 757403 39 4284 325.4 1.03 E 407991 4 -13.48 -29.32 11.40 -3.04 -34.44 13 407991 2143 3012139 39 222 1911.5 4.50 E 407991 2 -17.56 -22.69 13.72 -2.67 -29.20 14 407991 4175 2441199 39 6768 1336.0 3.47 E 407991 4 -18.66 -32.98 10.09 -3.18 -44.73 15 407991 1177 534384 39 442 468.0 0.95 E 407991 2 -4.38 -30.02 8.44 -3.52 -29.47 16 407991 3795 342906 39 1971 18.5 0.50 E 407991 2 -2.73 -33.39 6.70 -3.59 -33.01 17 407991 2533 798989 39 8064 408.0 1.08 E 407991 4 -15.59 -34.52 10.47 -3.71 -43.35 18 407991 2149 3235660 39 250 2244.0 4.85 E 407991 2 -15.94 -22.68 9.91 -2.50 -31.21 19 407991 4426 2032955 39 5454 298.1 2.79 E 407991 4 -19.02 -32.46 11.61 -2.76 -42.63 20 407991 1831 490283 39 541 152.4 0.93 E 407991 2 -3.15 -26.26 4.36 -1.65 -26.71 21 407991 5427 411002 39 1735 138.1 0.64 E 407991 2 -7.38 -30.50 7.56 -3.18 -33.50 22 408010 2533 909831 41 5586 274.7 1.22 E 408010 4 -20.58 -31.33 12.60 -2.71 -42.01 23 408010 2142 2867283 41 317 928.3 5.23 E 408010 2 -8.45 -26.83 10.65 -2.91 -27.54 24 408010 4175 2376528 41 5040 437.3 3.36 E 408010 4 -26.30 -35.14 21.68 -2.55 -42.31 25 408010 2377 769641 41 878 516.0 1.42 E 408010 2 -17.48 -32.72 20.62 -2.90 -32.48 26 408010 3795 240975 41 1642 34.0 0.39 E 408010 2 -23.23 -27.22 24.04 -2.30 -28.71 27 432555 2540 1013683 37 7620 262.4 1.19 E 432555 4 -1.64 -30.82 5.77 -1.11 -27.79 28 432555 2727 1946652 37 65163 117.3 2.00 E 432555 4 -6.90 -38.52 8.38 -1.85 -38.88 29 432555 6748 3471646 37 3066 1429.2 3.59 E 432555 2 -1.71 -36.96 5.70 -3.26 -36.24 30 432555 0 0 37 8061 0.00 no_match 31 460141 2535 1458721 31 380 556.9 1.88 E 460141 4 -30.99 -14.08 14.53 -0.24 -30.78 32 460141 4051 2824737 31 1950 1883.0 3.42 E 460141 4 -7.85 -35.04 10.12 -2.10 -34.86 33 460141 3595 1072992 31 171 860.1 1.26 E 460141 2 -27.41 -17.54 16.92 -0.06 -28.08 34 460141 2532 1494928 31 544 1136.5 1.90 E 460141 4 -29.52 -20.68 17.71 -1.11 -33.59 35 460141 4051 2965289 31 2964 2122.5 3.58 E 460141 4 -32.26 -20.84 16.81 -0.42 -36.71 36 460141 3478 1696308 31 218 731.4 1.90 E 460141 2 -26.85 -22.47 19.15 -1.10 -31.27 37 459602 2533 1511200 31 376 811.7 1.94 E 459602 4 -22.85 -23.31 16.78 -0.73 -30.12 38 459602 4204 2896656 31 1560 1556.0 3.53 E 459602 4 -12.71 -34.62 14.86 -1.74 -34.21 39 459602 3585 1122478 31 175 898.0 1.33 E 459602 2 -28.26 -26.70 25.99 -1.09 -30.06 40 459602 2538 1479491 31 528 1154.4 1.90 E 459602 4 -31.34 -24.64 20.31 -0.86 -36.54 41 459602 4204 3107132 31 2808 2114.1 3.77 E 459602 4 -33.39 -22.08 20.63 -0.67 -35.52 42 459602 3481 1709985 31 226 598.1 1.93 E 459602 2 -21.08 -24.21 15.92 -1.06 -30.43 43 158592 1720 441418 27 72 304.9 0.56 E 158592 3 -9.07 -19.50 3.69 -1.78 -26.67 44 158592 4181 1580669 27 144 1639.7 2.27 E 158592 4 -5.76 -24.47 4.49 -2.34 -28.08 45 158592 1959 827762 27 42 605.9 1.07 E 158592 3 -2.42 -27.43 4.94 -3.03 -27.94 46 158592 5912 1507163 27 72 1293.1 2.13 E 158592 2 -5.80 -24.32 4.44 -2.33 -28.01 47 158592 1723 418284 27 72 442.1 0.53 E 158592 3 -3.54 -26.07 4.54 -1.80 -26.88 48 158592 4181 1103993 27 288 1013.5 1.60 E 158592 4 -5.06 -28.95 4.92 -2.35 -31.45 49 158592 7899 1673544 27 42 2216.0 2.28 E 158592 3 -5.15 -25.08 4.39 -2.20 -28.04 50 158592 5911 1744627 27 42 1878.8 2.42 E 158592 2 -3.10 -26.43 4.71 -2.78 -27.61 51 14785 665 468797 29 2016 276.0 0.42 E 14785 4 -4.64 -28.67 5.35 -4.10 -32.05 52 14785 4032 1893436 29 744 1143.4 2.21 E 14785 2 -5.45 -25.19 3.96 -2.48 -29.16 53 221646 2037 922212 16 8 1668.6 0.91 E 221646 4 -11.55 -14.26 3.22 -0.69 -23.28 54 555094 3619 204889 35 9 456.4 0.55 E 555094 3 -9.05 -35.90 5.60 -0.84 -40.19 55 555094 5997 168353 35 9 344.9 0.46 E 555094 3 -9.76 -33.66 5.45 -1.88 -39.86 EOF: ../database_link/dbgen_lig_0002.db.gz end of file encountered total minimization steps = 5017833 for debugging, time = 108.5300 solvation corrected scores: (a) 1 407991 score: -44.728 nathvy = 39 nconfs = 6768 2 407991 score: -43.350 nathvy = 39 nconfs = 8064 3 407991 score: -42.923 nathvy = 39 nconfs = 4155 4 407991 score: -42.631 nathvy = 39 nconfs = 5454 5 408010 score: -42.306 nathvy = 41 nconfs = 5040 6 407991 score: -42.268 nathvy = 39 nconfs = 3120 7 408010 score: -42.014 nathvy = 41 nconfs = 5586 8 555094 score: -40.192 nathvy = 35 nconfs = 9 9 555094 score: -39.861 nathvy = 35 nconfs = 9 10 432555 score: -38.885 nathvy = 37 nconfs = 65163 11 460141 score: -36.712 nathvy = 31 nconfs = 2964 12 459602 score: -36.536 nathvy = 31 nconfs = 528 13 432555 score: -36.236 nathvy = 37 nconfs = 3066 14 459602 score: -35.517 nathvy = 31 nconfs = 2808 15 460141 score: -34.862 nathvy = 31 nconfs = 1950 16 407991 score: -34.441 nathvy = 39 nconfs = 4284 17 459602 score: -34.209 nathvy = 31 nconfs = 1560 18 460141 score: -33.592 nathvy = 31 nconfs = 544 19 407991 score: -33.502 nathvy = 39 nconfs = 3948 20 407991 score: -33.496 nathvy = 39 nconfs = 1735 21 407991 score: -33.344 nathvy = 39 nconfs = 3741 22 407991 score: -33.008 nathvy = 39 nconfs = 1971 23 407991 score: -32.693 nathvy = 39 nconfs = 1561 24 408010 score: -32.485 nathvy = 41 nconfs = 878 25 14785 score: -32.052 nathvy = 29 nconfs = 2016 26 407991 score: -32.049 nathvy = 39 nconfs = 1367 27 158592 score: -31.446 nathvy = 27 nconfs = 288 28 460141 score: -31.265 nathvy = 31 nconfs = 218 29 407991 score: -31.209 nathvy = 39 nconfs = 250 30 460141 score: -30.778 nathvy = 31 nconfs = 380 31 459602 score: -30.428 nathvy = 31 nconfs = 226 32 459602 score: -30.120 nathvy = 31 nconfs = 376 33 459602 score: -30.057 nathvy = 31 nconfs = 175 34 407991 score: -30.004 nathvy = 39 nconfs = 165 35 520053 score: -29.748 nathvy = 37 nconfs = 540 36 407991 score: -29.477 nathvy = 39 nconfs = 203 37 407991 score: -29.473 nathvy = 39 nconfs = 442 38 407991 score: -29.318 nathvy = 39 nconfs = 343 39 407991 score: -29.198 nathvy = 39 nconfs = 222 40 14785 score: -29.156 nathvy = 29 nconfs = 744 41 408010 score: -28.711 nathvy = 41 nconfs = 1642 42 460141 score: -28.081 nathvy = 31 nconfs = 171 43 158592 score: -28.077 nathvy = 27 nconfs = 144 44 158592 score: -28.035 nathvy = 27 nconfs = 42 45 158592 score: -28.012 nathvy = 27 nconfs = 72 46 158592 score: -27.937 nathvy = 27 nconfs = 42 47 432555 score: -27.792 nathvy = 37 nconfs = 7620 48 158592 score: -27.609 nathvy = 27 nconfs = 42 49 408010 score: -27.537 nathvy = 41 nconfs = 317 50 158592 score: -26.875 nathvy = 27 nconfs = 72 51 407991 score: -26.708 nathvy = 39 nconfs = 541 52 158592 score: -26.672 nathvy = 27 nconfs = 72 53 407991 score: -26.512 nathvy = 39 nconfs = 451 54 221646 score: -23.281 nathvy = 16 nconfs = 8 Date and Time: 28-Feb-12 19:38:30 elapsed time (sec): 108.6100