DOCK version 3.5.54, compiled on 20120216 CPU, Date, and Time: node-3-21.c.bkslab.org 19-Feb-12 07:23:32 Solvation type: context-dependent ligand desolvation Internal Distance Clashes will be checked Receptor spheres: ../../sph/match2.sph Receptor cluster number(s): 1 Desolvation grid: ../../grids/solvmap_sev.heavy Additional hydrogen desolvation grid: ../../grids/solvmap_sev.hydrogen :dislim = 1.5000 maxnodes = 4 ratiom = 0.0000 minnodes = 3 :lbinsz = 0.4000 lovlap = 0.1000 sbinsz = 0.4000 sovlap = 0.1000 Input ligand: ../database_link/dbgen_dec_0042.db.gz DelPhi grid: ../../grids/rec+sph_thinner.phi vdW parms: ../../grids/vdw.parms.amb.mindock chemgrid prefix: ../../grids/chem resolution = 0.3300000 number of points = 1821948 a maximum of 1 bad contacts will be allowed for each orientation random seed = 777 natmin = 5 natmax = 100 nsav = 50000 300000 molecules may be searched in this run hydrogens always written out zooming will not be done trilinear interpolation is always done Orientation minimization: best conformation Simplex parameters: Max energy to minimize: 0.100E+16 Max step-size for translation (A): 0.20 Max step-size for euler angles: 5.00 Min energy change for restart (kcal/mol): 1.00 Energy convergence tolerance (kcal/mol): 0.10 Max number of iterations: 200 database version: 5.2 7 colors used in ligand database file 12 colors used in receptor sphere file ligand color positive 1 merged number = 1 ligand color negative 2 merged number = 2 ligand color acceptor 3 merged number = 3 ligand color donor 4 merged number = 4 ligand color ester_o 5 merged number = 5 ligand color amide_o 6 merged number = 6 ligand color neutral 7 merged number = 7 receptor color positive 1 merged number = 1 receptor color negative 2 merged number = 2 receptor color acceptor 3 merged number = 3 receptor color donor 4 merged number = 4 receptor color ester_o 5 merged number = 5 receptor color amide_o 6 merged number = 6 receptor color neutral 7 merged number = 7 receptor color not_neutral 8 merged number = 8 receptor color positive_or_donor 9 merged number = 9 receptor color negative_or_acceptor 10 merged number = 10 receptor color neutral_or_acceptor_or_donor 11 merged number = 11 receptor color donacc 12 merged number = 12 12 colors in merged ligand-sphere color table this is a run with labeled color matching: match positive negative match positive negative_or_acceptor match positive not_neutral match negative positive match negative positive_or_donor match negative not_neutral match donor acceptor match donor donacc match donor negative_or_acceptor match donor neutral_or_acceptor_or_donor match donor not_neutral match acceptor donor match acceptor donacc match acceptor positive_or_donor match acceptor neutral_or_acceptor_or_donor match acceptor not_neutral match neutral neutral match neutral neutral_or_acceptor_or_donor match ester_o donor match ester_o donacc match ester_o positive_or_donor match ester_o not_neutral match amide_o donor match amide_o donacc match amide_o positive_or_donor match amide_o not_neutral 26 chemical matches specified grid min 4.889000 18.34500 64.43200 grid max 41.88900 60.84500 103.9320 using cluster number: 1 output file: test.eel1.gz Receptor spheres: 45 0 0 0 0 0 38 non-zero colors in receptor sphere cluster cluster 1 with 45 spheres 9001 9002 9003 9004 9005 9006 9007 9008 9009 9010 9011 9012 9013 9014 9015 9016 9017 9018 9019 9020 9021 9022 9023 9024 9025 9026 9027 9028 9029 9030 9031 9032 9033 9034 9035 9036 9037 9038 9039 9040 9041 9042 9043 9044 9045 maximum receptor sphere-sphere distance 12.24758 mol# id_num matched nscored nhvy nconfs part.fcn Time E id_num nbr elect + vdW + polsol + apolsol = Total 1 C64155873 4332 5053649 30 870 5815.5 15.11 E C64155873 2 -14.13 -26.19 5.22 -2.85 -37.94 2 C64155873 6528 5378371 30 858 4523.5 15.07 E C64155873 3 -19.18 -24.30 4.90 -2.23 -40.81 3 C64155873 4331 4953091 30 858 2782.8 14.81 E C64155873 2 -15.93 -28.96 10.71 -2.86 -37.04 4 C65252660 2599 2530537 27 5300 102.5 5.81 E C65252660 3 -11.98 -28.19 1.43 -3.22 -41.96 5 C65252660 5035 4404695 27 266 263.8 13.25 E C65252660 2 -19.45 -24.13 4.87 -2.55 -41.27 6 C65329895 3795 4256288 30 3444 2191.7 10.15 E C65329895 2 -20.17 -28.16 7.61 -3.67 -44.39 7 C65329895 4336 5450412 30 1511 4839.2 12.41 E C65329895 2 -11.39 -29.37 5.14 -4.08 -39.69 8 C65329895 3909 3111942 30 7197 2398.9 7.15 E C65329895 2 -11.25 -30.67 5.23 -4.46 -41.15 9 C67157800 7789 11816473 29 228 10132.2 29.81 E C67157800 3 -15.27 -21.16 3.35 -2.35 -35.43 10 C67157800 1272 1129587 29 904 262.0 2.91 E C67157800 3 -12.20 -26.00 5.15 -2.24 -35.29 11 C67157800 2458 1955218 29 805 1512.0 5.69 E C67157800 3 -16.14 -18.85 4.29 -1.09 -31.80 12 C67157800 7789 11797733 29 242 9947.2 29.87 E C67157800 3 -15.49 -20.99 3.96 -2.12 -34.63 13 C67157800 1272 1255915 29 936 271.7 3.25 E C67157800 3 -13.22 -21.26 2.72 -2.49 -34.26 14 C67157800 3486 3010438 29 605 1965.5 8.84 E C67157800 3 -14.14 -17.69 1.73 -1.88 -31.98 15 C67157800 7789 12132348 29 372 10222.1 31.54 E C67157800 3 -17.30 -19.78 4.18 -2.65 -35.55 16 C67157800 1272 1258175 29 1496 1088.0 3.29 E C67157800 3 -17.27 -20.07 2.81 -1.78 -36.32 17 C67157800 2406 2503082 29 744 1196.6 7.59 E C67157800 3 -11.15 -21.60 2.00 -1.88 -32.64 18 C67157800 7754 10048036 29 252 7039.0 28.01 E C67157800 3 -15.82 -22.03 4.77 -2.91 -36.00 19 C67157800 4489 4296491 29 1008 2223.4 13.48 E C67157800 3 -10.93 -24.66 4.07 -3.17 -34.69 20 C67157800 4489 4299658 29 1008 2879.2 13.41 E C67157800 3 -11.40 -24.38 4.37 -3.22 -34.62 EOF: ../database_link/dbgen_dec_0042.db.gz end of file encountered total minimization steps = 5994034 for debugging, time = 274.4800 solvation corrected scores: (a) 1 C65329895 score: -44.390 nathvy = 30 nconfs = 3444 2 C65252660 score: -41.965 nathvy = 27 nconfs = 5300 3 C65252660 score: -41.266 nathvy = 27 nconfs = 266 4 C65329895 score: -41.146 nathvy = 30 nconfs = 7197 5 C64155873 score: -40.806 nathvy = 30 nconfs = 858 6 C65329895 score: -39.690 nathvy = 30 nconfs = 1511 7 C64155873 score: -37.939 nathvy = 30 nconfs = 870 8 C64155873 score: -37.044 nathvy = 30 nconfs = 858 9 C67157800 score: -36.315 nathvy = 29 nconfs = 1496 10 C67157800 score: -35.996 nathvy = 29 nconfs = 252 11 C67157800 score: -35.548 nathvy = 29 nconfs = 372 12 C67157800 score: -35.426 nathvy = 29 nconfs = 228 13 C67157800 score: -35.287 nathvy = 29 nconfs = 904 14 C67157800 score: -34.687 nathvy = 29 nconfs = 1008 15 C67157800 score: -34.626 nathvy = 29 nconfs = 242 16 C67157800 score: -34.623 nathvy = 29 nconfs = 1008 17 C67157800 score: -34.260 nathvy = 29 nconfs = 936 18 C67157800 score: -32.635 nathvy = 29 nconfs = 744 19 C67157800 score: -31.984 nathvy = 29 nconfs = 605 20 C67157800 score: -31.799 nathvy = 29 nconfs = 805 Date and Time: 19-Feb-12 07:28:18 elapsed time (sec): 274.5100