DOCK version 3.5.54, compiled on 20120216 CPU, Date, and Time: node-5-09.c.bkslab.org 19-Feb-12 07:24:42 Solvation type: context-dependent ligand desolvation Internal Distance Clashes will be checked Receptor spheres: ../../sph/match2.sph Receptor cluster number(s): 1 Desolvation grid: ../../grids/solvmap_sev.heavy Additional hydrogen desolvation grid: ../../grids/solvmap_sev.hydrogen :dislim = 1.5000 maxnodes = 4 ratiom = 0.0000 minnodes = 3 :lbinsz = 0.4000 lovlap = 0.1000 sbinsz = 0.4000 sovlap = 0.1000 Input ligand: ../database_link/dbgen_lig_0002.db.gz DelPhi grid: ../../grids/rec+sph_thinner.phi vdW parms: ../../grids/vdw.parms.amb.mindock chemgrid prefix: ../../grids/chem resolution = 0.3300000 number of points = 1821948 a maximum of 1 bad contacts will be allowed for each orientation random seed = 777 natmin = 5 natmax = 100 nsav = 50000 300000 molecules may be searched in this run hydrogens always written out zooming will not be done trilinear interpolation is always done Orientation minimization: best conformation Simplex parameters: Max energy to minimize: 0.100E+16 Max step-size for translation (A): 0.20 Max step-size for euler angles: 5.00 Min energy change for restart (kcal/mol): 1.00 Energy convergence tolerance (kcal/mol): 0.10 Max number of iterations: 200 database version: 5.2 7 colors used in ligand database file 12 colors used in receptor sphere file ligand color positive 1 merged number = 1 ligand color negative 2 merged number = 2 ligand color acceptor 3 merged number = 3 ligand color donor 4 merged number = 4 ligand color ester_o 5 merged number = 5 ligand color amide_o 6 merged number = 6 ligand color neutral 7 merged number = 7 receptor color positive 1 merged number = 1 receptor color negative 2 merged number = 2 receptor color acceptor 3 merged number = 3 receptor color donor 4 merged number = 4 receptor color ester_o 5 merged number = 5 receptor color amide_o 6 merged number = 6 receptor color neutral 7 merged number = 7 receptor color not_neutral 8 merged number = 8 receptor color positive_or_donor 9 merged number = 9 receptor color negative_or_acceptor 10 merged number = 10 receptor color neutral_or_acceptor_or_donor 11 merged number = 11 receptor color donacc 12 merged number = 12 12 colors in merged ligand-sphere color table this is a run with labeled color matching: match positive negative match positive negative_or_acceptor match positive not_neutral match negative positive match negative positive_or_donor match negative not_neutral match donor acceptor match donor donacc match donor negative_or_acceptor match donor neutral_or_acceptor_or_donor match donor not_neutral match acceptor donor match acceptor donacc match acceptor positive_or_donor match acceptor neutral_or_acceptor_or_donor match acceptor not_neutral match neutral neutral match neutral neutral_or_acceptor_or_donor match ester_o donor match ester_o donacc match ester_o positive_or_donor match ester_o not_neutral match amide_o donor match amide_o donacc match amide_o positive_or_donor match amide_o not_neutral 26 chemical matches specified grid min 4.889000 18.34500 64.43200 grid max 41.88900 60.84500 103.9320 using cluster number: 1 output file: test.eel1.gz Receptor spheres: 45 0 0 0 0 0 38 non-zero colors in receptor sphere cluster cluster 1 with 45 spheres 9001 9002 9003 9004 9005 9006 9007 9008 9009 9010 9011 9012 9013 9014 9015 9016 9017 9018 9019 9020 9021 9022 9023 9024 9025 9026 9027 9028 9029 9030 9031 9032 9033 9034 9035 9036 9037 9038 9039 9040 9041 9042 9043 9044 9045 maximum receptor sphere-sphere distance 12.24758 mol# id_num matched nscored nhvy nconfs part.fcn Time E id_num nbr elect + vdW + polsol + apolsol = Total 1 520053 2220 1760351 37 540 1770.4 1.70 E 520053 4 -4.15 -26.11 10.35 -2.52 -22.42 2 407991 2533 588096 39 3741 298.3 0.48 E 407991 4 -13.76 -29.25 6.30 -3.01 -39.71 3 407991 2149 2433638 39 165 394.4 2.61 E 407991 2 -8.40 -27.18 3.14 -4.18 -36.62 4 407991 4425 1769131 39 4155 258.4 1.58 E 407991 4 -20.15 -31.75 6.74 -2.96 -48.12 5 407991 1088 489831 39 451 294.9 0.52 E 407991 2 -8.20 -23.61 3.91 -3.01 -30.91 6 407991 5427 291803 39 1367 115.6 0.32 E 407991 2 -7.52 -27.69 2.85 -3.89 -36.26 7 407991 2540 518307 39 3948 303.7 0.54 E 407991 4 -14.92 -25.98 6.44 -3.08 -37.54 8 407991 2152 2732768 39 203 2320.0 2.91 E 407991 2 -11.17 -26.51 6.22 -2.81 -34.26 9 407991 2719 1459803 39 3120 1045.4 1.58 E 407991 4 -18.31 -30.72 5.79 -2.86 -46.10 10 407991 994 392375 39 343 197.0 0.51 E 407991 2 -1.28 -29.96 0.05 -2.11 -33.29 11 407991 3789 164863 39 1561 88.0 0.21 E 407991 2 -6.81 -27.13 2.60 -3.80 -35.14 12 407991 2534 573683 39 4284 95.0 0.55 E 407991 4 -23.70 -21.83 7.58 -2.85 -40.81 13 407991 2143 2760864 39 222 1893.0 2.77 E 407991 2 -17.64 -22.47 8.87 -2.54 -33.78 14 407991 4175 2078561 39 6768 1336.0 1.96 E 407991 4 -18.76 -32.73 5.71 -2.99 -48.77 15 407991 1177 497131 39 442 230.3 0.57 E 407991 2 -3.06 -29.78 2.64 -2.98 -33.18 16 407991 3795 280656 39 1971 21.0 0.28 E 407991 2 -2.68 -33.47 1.96 -3.35 -37.54 17 407991 2533 595479 39 8064 253.1 0.57 E 407991 4 -18.03 -32.21 6.46 -2.70 -46.47 18 407991 2149 2914484 39 250 839.1 2.87 E 407991 2 -14.38 -26.25 6.60 -2.76 -36.78 19 407991 4426 1662773 39 5454 247.2 1.54 E 407991 4 -19.14 -32.33 6.31 -2.63 -47.79 20 407991 1831 469704 39 541 282.6 0.58 E 407991 2 -0.62 -24.78 0.74 -2.42 -27.08 21 407991 5427 339342 39 1735 81.6 0.38 E 407991 2 -5.89 -33.20 6.48 -3.32 -35.94 22 408010 2533 623473 41 5586 390.0 0.60 E 408010 4 -33.88 -29.71 16.45 -2.20 -49.35 23 408010 2142 2675263 41 317 1394.0 3.17 E 408010 2 -7.64 -25.09 0.95 -2.27 -34.05 24 408010 4175 2006214 41 5040 441.2 1.86 E 408010 4 -26.40 -35.14 11.53 -2.38 -52.38 25 408010 2377 643587 41 878 483.2 0.76 E 408010 2 -19.03 -33.81 12.41 -2.35 -42.77 26 408010 3795 180480 41 1642 37.6 0.20 E 408010 2 -23.64 -25.62 15.69 -1.90 -35.48 27 432555 2540 896643 37 7620 4.0 0.69 E 432555 4 -7.52 -33.15 7.62 -0.75 -33.79 28 432555 2727 1640188 37 65163 304.4 1.11 E 432555 4 -7.05 -38.34 8.44 -2.00 -38.95 29 432555 6748 3238472 37 3066 1791.0 2.15 E 432555 2 -2.62 -35.27 5.01 -3.06 -35.94 30 432555 0 0 37 8061 0.00 no_match 31 460141 2535 1296465 31 380 737.2 1.06 E 460141 4 -19.19 -24.55 7.33 -1.24 -37.65 32 460141 4051 2446177 31 1950 2071.4 1.93 E 460141 4 -12.60 -34.47 4.01 -2.15 -45.21 33 460141 3595 961669 31 171 444.4 0.74 E 460141 2 -27.42 -23.32 13.45 -0.67 -37.96 34 460141 2532 1322304 31 544 1206.1 1.03 E 460141 4 -24.43 -23.38 8.08 -1.33 -41.06 35 460141 4051 2624801 31 2964 1070.4 2.04 E 460141 4 -17.39 -32.59 7.32 -1.99 -44.65 36 460141 3478 1459496 31 218 648.8 1.05 E 460141 2 -17.05 -23.15 5.21 -1.32 -36.31 37 459602 2533 1342328 31 376 841.8 1.09 E 459602 4 -9.75 -29.88 2.47 -1.64 -38.80 38 459602 4204 2519664 31 1560 2432.0 1.98 E 459602 4 -13.19 -34.44 5.01 -2.26 -44.87 39 459602 3585 970562 31 175 898.0 0.74 E 459602 2 -26.95 -26.92 18.05 -1.20 -37.02 40 459602 2538 1338845 31 528 1244.0 1.07 E 459602 4 -29.69 -22.23 12.26 -1.51 -41.18 41 459602 4204 2753565 31 2808 2028.4 2.11 E 459602 4 -18.55 -31.47 8.84 -2.08 -43.27 42 459602 3481 1384129 31 226 599.7 1.07 E 459602 2 -19.84 -22.95 8.19 -1.31 -35.90 43 158592 1720 369442 27 72 398.9 0.31 E 158592 3 -1.57 -26.11 4.41 -2.92 -26.19 44 158592 4181 1290929 27 144 746.4 1.17 E 158592 4 -4.95 -26.20 4.42 -2.10 -28.83 45 158592 1959 714176 27 42 631.9 0.59 E 158592 3 -0.52 -28.62 4.58 -3.08 -27.64 46 158592 5912 1407408 27 72 1494.6 1.22 E 158592 2 -5.53 -24.86 4.46 -2.01 -27.94 47 158592 1723 370206 27 72 440.2 0.29 E 158592 3 -3.46 -26.16 3.65 -1.64 -27.61 48 158592 4181 889578 27 288 826.2 0.83 E 158592 4 -4.80 -29.18 4.55 -2.29 -31.72 49 158592 7899 1472446 27 42 2216.0 1.26 E 158592 3 -5.11 -25.14 4.04 -1.99 -28.19 50 158592 5911 1653911 27 42 2125.2 1.39 E 158592 2 -3.13 -26.24 4.57 -2.49 -27.29 51 14785 665 444447 29 2016 250.3 0.26 E 14785 4 -4.19 -29.57 5.64 -4.27 -32.39 52 14785 4032 1712261 29 744 878.3 1.24 E 14785 2 -3.94 -30.29 4.99 -3.74 -32.98 53 221646 2037 906276 16 8 1833.4 0.57 E 221646 4 -9.12 -16.71 3.44 -0.59 -22.98 54 555094 3619 200227 35 9 522.0 0.34 E 555094 3 -9.18 -35.92 5.30 -1.14 -40.93 55 555094 5997 145940 35 9 290.5 0.29 E 555094 3 -9.50 -33.96 5.27 -2.15 -40.35 EOF: ../database_link/dbgen_lig_0002.db.gz end of file encountered total minimization steps = 4372977 for debugging, time = 64.66000 solvation corrected scores: (a) 1 408010 score: -52.384 nathvy = 41 nconfs = 5040 2 408010 score: -49.346 nathvy = 41 nconfs = 5586 3 407991 score: -48.770 nathvy = 39 nconfs = 6768 4 407991 score: -48.123 nathvy = 39 nconfs = 4155 5 407991 score: -47.789 nathvy = 39 nconfs = 5454 6 407991 score: -46.474 nathvy = 39 nconfs = 8064 7 407991 score: -46.095 nathvy = 39 nconfs = 3120 8 460141 score: -45.214 nathvy = 31 nconfs = 1950 9 459602 score: -44.873 nathvy = 31 nconfs = 1560 10 460141 score: -44.649 nathvy = 31 nconfs = 2964 11 459602 score: -43.266 nathvy = 31 nconfs = 2808 12 408010 score: -42.775 nathvy = 41 nconfs = 878 13 459602 score: -41.176 nathvy = 31 nconfs = 528 14 460141 score: -41.061 nathvy = 31 nconfs = 544 15 555094 score: -40.935 nathvy = 35 nconfs = 9 16 407991 score: -40.807 nathvy = 39 nconfs = 4284 17 555094 score: -40.350 nathvy = 35 nconfs = 9 18 407991 score: -39.712 nathvy = 39 nconfs = 3741 19 432555 score: -38.951 nathvy = 37 nconfs = 65163 20 459602 score: -38.800 nathvy = 31 nconfs = 376 21 460141 score: -37.961 nathvy = 31 nconfs = 171 22 460141 score: -37.650 nathvy = 31 nconfs = 380 23 407991 score: -37.537 nathvy = 39 nconfs = 1971 24 407991 score: -37.535 nathvy = 39 nconfs = 3948 25 459602 score: -37.023 nathvy = 31 nconfs = 175 26 407991 score: -36.783 nathvy = 39 nconfs = 250 27 407991 score: -36.624 nathvy = 39 nconfs = 165 28 460141 score: -36.310 nathvy = 31 nconfs = 218 29 407991 score: -36.260 nathvy = 39 nconfs = 1367 30 407991 score: -35.938 nathvy = 39 nconfs = 1735 31 432555 score: -35.936 nathvy = 37 nconfs = 3066 32 459602 score: -35.903 nathvy = 31 nconfs = 226 33 408010 score: -35.482 nathvy = 41 nconfs = 1642 34 407991 score: -35.136 nathvy = 39 nconfs = 1561 35 407991 score: -34.262 nathvy = 39 nconfs = 203 36 408010 score: -34.045 nathvy = 41 nconfs = 317 37 432555 score: -33.793 nathvy = 37 nconfs = 7620 38 407991 score: -33.777 nathvy = 39 nconfs = 222 39 407991 score: -33.293 nathvy = 39 nconfs = 343 40 407991 score: -33.177 nathvy = 39 nconfs = 442 41 14785 score: -32.980 nathvy = 29 nconfs = 744 42 14785 score: -32.386 nathvy = 29 nconfs = 2016 43 158592 score: -31.723 nathvy = 27 nconfs = 288 44 407991 score: -30.913 nathvy = 39 nconfs = 451 45 158592 score: -28.829 nathvy = 27 nconfs = 144 46 158592 score: -28.195 nathvy = 27 nconfs = 42 47 158592 score: -27.942 nathvy = 27 nconfs = 72 48 158592 score: -27.642 nathvy = 27 nconfs = 42 49 158592 score: -27.610 nathvy = 27 nconfs = 72 50 158592 score: -27.286 nathvy = 27 nconfs = 42 51 407991 score: -27.082 nathvy = 39 nconfs = 541 52 158592 score: -26.195 nathvy = 27 nconfs = 72 53 221646 score: -22.981 nathvy = 16 nconfs = 8 54 520053 score: -22.419 nathvy = 37 nconfs = 540 Date and Time: 19-Feb-12 07:26:05 elapsed time (sec): 64.8000