usefragsph not on There are 22 ligand heavy atoms Ligand center of coords (x y z): 34.1256363636364 4.89068181818182 1.44240909090909 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1238 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 725 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 725 Number of spheres polar: 264, nonpolar: 338, out of current total: 725 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 24.13492 44.11653 -4.96304 14.88940 -8.48447 11.42000 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 381 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 305 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 267 Spheres center of coords (x y z): 31.5267676779026 8.6544993258427 1.9681893258427 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.97391760571338 Final number of output spheres is: 60 Number of polar spheres: 30 Number of nonpolar spheres: 23 Number of spheres that are near neither polar nor nonpolar receptor atoms: 7 Final number of spheres that are from crystallographic ligand: 22