usefragsph not on There are 22 ligand heavy atoms Ligand center of coords (x y z): 15.6540909090909 42.7861363636364 65.5902272727273 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1185 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 740 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 740 Number of spheres polar: 256, nonpolar: 372, out of current total: 740 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 6.03014 25.63979 32.82768 49.39426 56.82262 75.58947 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 222 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 186 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 172 Spheres center of coords (x y z): 15.9066918023256 42.4059156395349 69.8924326744186 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 6.23256952522539 Final number of output spheres is: 45 Number of polar spheres: 21 Number of nonpolar spheres: 18 Number of spheres that are near neither polar nor nonpolar receptor atoms: 6 Final number of spheres that are from crystallographic ligand: 22