usefragsph not on There are 4 ligand heavy atoms Ligand center of coords (x y z): 35.1995 4.19575 2.34425 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 653 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 471 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 470 Number of spheres polar: 216, nonpolar: 163, out of current total: 470 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 25.26900 45.12573 -5.10644 14.12359 -7.57850 12.16127 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 156 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 118 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 82 Spheres center of coords (x y z): 32.3613347560976 9.2476656097561 1.3308112195122 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 8.1415228979219 Final number of output spheres is: 45 Number of polar spheres: 17 Number of nonpolar spheres: 15 Number of spheres that are near neither polar nor nonpolar receptor atoms: 13 Final number of spheres that are from crystallographic ligand: 4