usefragsph not on There are 35 ligand heavy atoms Ligand center of coords (x y z): 33.4244857142857 6.59251428571429 1.38885714285714 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1679 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 790 WARNING: removing a crystallographic sphere that is distance 0.820203633252136 angstroms from closest receptor atom Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 789 Number of spheres polar: 231, nonpolar: 356, out of current total: 789 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 23.43480 43.39625 -3.38382 16.55489 -8.48890 10.93924 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 265 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 215 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 200 Spheres center of coords (x y z): 31.99598435 9.93451920000001 2.3206257 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.39542910712972 Final number of output spheres is: 45 Number of polar spheres: 18 Number of nonpolar spheres: 21 Number of spheres that are near neither polar nor nonpolar receptor atoms: 6 Final number of spheres that are from crystallographic ligand: 34