usefragsph not on
There are 29 ligand heavy atoms
Ligand center of coords (x y z): 34.9531034482759 8.69179310344828 2.22537931034483
Using crystallographic ligand as spheres for output
Starting number of spheres from sph/sph cluster 0: 1618
FINISHED READING IN FILE sph/sph CLUSTER 0 
Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 854
WARNING: removing a crystallographic sphere that is distance 1.05292449871774 angstroms from closest receptor atom
Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 853
Number of spheres polar: 251, nonpolar: 394, out of current total: 853
Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 24.98001 44.93662 -1.26423 18.69105 -7.55912 10.88384
Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 469
Number of spheres after second pass removing spheres absolutely <0.5 from each other: 394
Crystallographic spheres are present, so doing continuity based on crystallographic spheres
After continuity checking, number of spheres is: 381
Spheres center of coords (x y z): 32.867287664042 11.2830596062992 2.72705650918635
Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8)
Average weighted-distance for final elimination is: 5.65655320414459
Final number of output spheres is: 60
Number of polar spheres: 26
Number of nonpolar spheres: 19
Number of spheres that are near neither polar nor nonpolar receptor atoms: 15
Final number of spheres that are from crystallographic ligand: 28