usefragsph not on There are 21 ligand heavy atoms Ligand center of coords (x y z): 34.9869523809524 7.83433333333333 1.66938095238095 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1224 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 776 WARNING: removing a crystallographic sphere that is distance 1.09492191502408 angstroms from closest receptor atom Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 775 Number of spheres polar: 266, nonpolar: 331, out of current total: 775 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 24.99700 44.81096 -2.14396 17.79733 -8.30840 10.31240 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 243 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 199 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 179 Spheres center of coords (x y z): 33.364437821229 11.6301973184358 2.79425033519553 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 6.03657765943449 Final number of output spheres is: 45 Number of polar spheres: 17 Number of nonpolar spheres: 17 Number of spheres that are near neither polar nor nonpolar receptor atoms: 11 Final number of spheres that are from crystallographic ligand: 20