usefragsph not on There are 26 ligand heavy atoms Ligand center of coords (x y z): 10.6363076923077 39.4841923076923 68.2281923076923 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1444 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 681 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 681 Number of spheres polar: 291, nonpolar: 312, out of current total: 681 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 0.64470 20.60705 29.55587 48.93529 58.27790 78.14571 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 221 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 169 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 142 Spheres center of coords (x y z): 13.329636056338 42.0071029577465 70.6206754929577 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 6.16507327447695 Final number of output spheres is: 45 Number of polar spheres: 27 Number of nonpolar spheres: 17 Number of spheres that are near neither polar nor nonpolar receptor atoms: 1 Final number of spheres that are from crystallographic ligand: 26