usefragsph not on There are 21 ligand heavy atoms Ligand center of coords (x y z): 27.9009047619048 85.9185714285714 -0.79947619047619 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1605 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 889 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 889 Number of spheres polar: 392, nonpolar: 401, out of current total: 889 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 18.02482 37.84777 75.93946 95.90868 -10.27767 9.14436 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 411 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 345 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 295 Spheres center of coords (x y z): 28.9358796949153 81.1414054915254 -0.67026827118644 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 6.93127055283995 Final number of output spheres is: 60 Number of polar spheres: 27 Number of nonpolar spheres: 30 Number of spheres that are near neither polar nor nonpolar receptor atoms: 3 Final number of spheres that are from crystallographic ligand: 21