usefragsph not on There are 17 ligand heavy atoms Ligand center of coords (x y z): 15.4498823529412 -2.13458823529412 3.55329411764706 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1255 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 763 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 763 Number of spheres polar: 303, nonpolar: 372, out of current total: 763 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 5.59031 25.43143 -12.09426 7.85362 -6.43308 13.33802 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 390 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 327 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 107 Spheres center of coords (x y z): 12.7205561682243 -1.83571906542056 2.25091046728972 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 3.44018363996873 Final number of output spheres is: 60 Number of polar spheres: 23 Number of nonpolar spheres: 37 Number of spheres that are near neither polar nor nonpolar receptor atoms: 0 Final number of spheres that are from crystallographic ligand: 17