usefragsph not on There are 15 ligand heavy atoms Ligand center of coords (x y z): 25.5260666666667 0.693333333333333 1.61353333333333 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1124 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 623 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 623 Number of spheres polar: 337, nonpolar: 243, out of current total: 623 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 15.55853 35.50400 -9.26691 10.66772 -8.29106 11.45245 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 173 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 135 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 60 Spheres center of coords (x y z): 27.7614225 2.40234683333333 1.89486066666667 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 4.20132017631826 Final number of output spheres is: 45 Number of polar spheres: 20 Number of nonpolar spheres: 24 Number of spheres that are near neither polar nor nonpolar receptor atoms: 1 Final number of spheres that are from crystallographic ligand: 15