usefragsph not on There are 15 ligand heavy atoms Ligand center of coords (x y z): 25.6838666666667 -0.963733333333333 -1.7168 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1136 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 670 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 670 Number of spheres polar: 346, nonpolar: 277, out of current total: 670 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 15.76222 35.63075 -10.90405 8.94954 -11.34712 8.21666 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 312 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 255 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 131 Spheres center of coords (x y z): 27.8138025954199 -2.21296465648855 -1.96281763358779 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 3.99790042333732 Final number of output spheres is: 60 Number of polar spheres: 21 Number of nonpolar spheres: 38 Number of spheres that are near neither polar nor nonpolar receptor atoms: 1 Final number of spheres that are from crystallographic ligand: 15