usefragsph not on There are 13 ligand heavy atoms Ligand center of coords (x y z): 26.0599230769231 0.696384615384615 1.17423076923077 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1184 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 696 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 696 Number of spheres polar: 339, nonpolar: 303, out of current total: 696 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 16.06587 36.04575 -9.22310 10.68008 -8.63270 10.44298 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 197 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 152 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 121 Spheres center of coords (x y z): 27.0864360330578 5.24106454545455 0.216076859504132 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 7.73536135995828 Final number of output spheres is: 45 Number of polar spheres: 19 Number of nonpolar spheres: 22 Number of spheres that are near neither polar nor nonpolar receptor atoms: 4 Final number of spheres that are from crystallographic ligand: 13