usefragsph not on There are 14 ligand heavy atoms Ligand center of coords (x y z): -4.60892857142857 18.1934285714286 -19.8167142857143 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 808 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 524 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 514 Number of spheres polar: 155, nonpolar: 202, out of current total: 514 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -14.45719 5.34900 8.23833 28.12641 -29.46171 -10.08500 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 288 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 255 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 242 Spheres center of coords (x y z): -4.26508285123967 18.669979214876 -20.4562130165289 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 6.21748355463627 Final number of output spheres is: 60 Number of polar spheres: 14 Number of nonpolar spheres: 20 Number of spheres that are near neither polar nor nonpolar receptor atoms: 26 Final number of spheres that are from crystallographic ligand: 14