usefragsph not on There are 10 ligand heavy atoms Ligand center of coords (x y z): 23.9711 -1.3049 -3.9236 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 998 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 588 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 588 Number of spheres polar: 283, nonpolar: 255, out of current total: 588 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 14.02633 33.96629 -11.29030 8.68809 -13.49170 6.04409 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 170 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 138 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 55 Spheres center of coords (x y z): 25.7656856363636 -1.61422981818182 -2.66377727272727 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 3.77565545328368 Final number of output spheres is: 45 Number of polar spheres: 20 Number of nonpolar spheres: 24 Number of spheres that are near neither polar nor nonpolar receptor atoms: 1 Final number of spheres that are from crystallographic ligand: 10