usefragsph not on There are 10 ligand heavy atoms Ligand center of coords (x y z): 23.9711 -1.3049 -3.9236 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 998 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 588 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 588 Number of spheres polar: 283, nonpolar: 255, out of current total: 588 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 14.02633 33.96629 -11.29030 8.68809 -13.49170 6.04409 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 297 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 230 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 108 Spheres center of coords (x y z): 25.9651840740741 -1.80031324074074 -2.55599203703704 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 3.96222582591183 Final number of output spheres is: 60 Number of polar spheres: 25 Number of nonpolar spheres: 35 Number of spheres that are near neither polar nor nonpolar receptor atoms: 0 Final number of spheres that are from crystallographic ligand: 10