usefragsph not on There are 21 ligand heavy atoms Ligand center of coords (x y z): 11.1511428571429 -1.433 0.63452380952381 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1575 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 793 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 793 Number of spheres polar: 340, nonpolar: 359, out of current total: 793 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 1.18601 21.14361 -11.33870 8.53737 -9.35373 10.28567 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 224 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 171 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 142 Spheres center of coords (x y z): 10.234290915493 -6.1085164084507 0.649465211267606 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 6.89563373286082 Final number of output spheres is: 45 Number of polar spheres: 23 Number of nonpolar spheres: 19 Number of spheres that are near neither polar nor nonpolar receptor atoms: 3 Final number of spheres that are from crystallographic ligand: 21