usefragsph not on There are 22 ligand heavy atoms Ligand center of coords (x y z): -27.6009090909091 1.40504545454545 -0.991590909090909 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1493 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 773 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 773 Number of spheres polar: 342, nonpolar: 347, out of current total: 773 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -37.56483 -17.60337 -8.53908 11.39462 -10.35419 8.99030 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 216 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 162 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 132 Spheres center of coords (x y z): -28.4403904545455 5.98992939393939 -0.52673643939394 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 6.66430661778032 Final number of output spheres is: 45 Number of polar spheres: 27 Number of nonpolar spheres: 15 Number of spheres that are near neither polar nor nonpolar receptor atoms: 3 Final number of spheres that are from crystallographic ligand: 22