Distance from surface specified: 1.80 There are 23 ligand heavy atoms Ligand center of coords (x y z): 10.321652173913 39.950347826087 68.0464782608696 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 12471 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (14 angstroms): 11204 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<2 angstroms): 10749 Number of spheres polar: 6706, nonpolar: 3079, out of current total: 10749 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -3.67220 24.31840 26.02500 53.94820 54.08660 82.04460 Number of spheres after removing spheres too close to each other (approximately <1.4 angstroms): 1034 Number of spheres after second pass removing spheres absolutely <0.9 from each other: 477 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 448 Spheres center of coords (x y z): 8.80919062500001 39.3061986607143 74.1082535714286 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 11.4613201813736 Final number of output spheres is: 200 Number of polar spheres: 131 Number of nonpolar spheres: 61 Number of spheres that are near neither polar nor nonpolar receptor atoms: 8 Final number of spheres that are from crystallographic ligand: 23