usefragsph not on There are 26 ligand heavy atoms Ligand center of coords (x y z): -26.9873846153846 -1.6315 1.62134615384615 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1640 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 803 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 803 Number of spheres polar: 355, nonpolar: 354, out of current total: 803 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -36.93992 -16.98880 -11.55781 8.23864 -8.25776 11.55151 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 376 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 309 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 270 Spheres center of coords (x y z): -27.9381574814815 -6.03747955555555 0.661289407407407 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 6.78948351092139 Final number of output spheres is: 60 Number of polar spheres: 38 Number of nonpolar spheres: 21 Number of spheres that are near neither polar nor nonpolar receptor atoms: 1 Final number of spheres that are from crystallographic ligand: 26