usefragsph not on There are 23 ligand heavy atoms Ligand center of coords (x y z): 10.321652173913 39.950347826087 68.0464782608696 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1364 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 685 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 685 Number of spheres polar: 241, nonpolar: 348, out of current total: 685 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 0.34696 20.30113 29.96244 48.39221 58.18856 78.04588 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 200 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 168 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 142 Spheres center of coords (x y z): 13.3187441549296 42.0085070422535 70.9798562676057 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 6.42520242224655 Final number of output spheres is: 45 Number of polar spheres: 19 Number of nonpolar spheres: 20 Number of spheres that are near neither polar nor nonpolar receptor atoms: 6 Final number of spheres that are from crystallographic ligand: 23