usefragsph not on There are 27 ligand heavy atoms Ligand center of coords (x y z): 98.8332962962963 111.490037037037 97.2667037037037 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1147 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 726 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 716 Number of spheres polar: 213, nonpolar: 306, out of current total: 716 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 88.93172 108.79469 101.50066 121.40137 87.36920 107.21288 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 432 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 376 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 334 Spheres center of coords (x y z): 98.9122629041916 109.852195179641 97.7760944311378 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 6.54077384393355 Final number of output spheres is: 60 Number of polar spheres: 17 Number of nonpolar spheres: 37 Number of spheres that are near neither polar nor nonpolar receptor atoms: 6 Final number of spheres that are from crystallographic ligand: 27