usefragsph not on There are 22 ligand heavy atoms Ligand center of coords (x y z): 232.883364090909 80.1252727272727 184.192455 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1199 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 800 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 800 Number of spheres polar: 250, nonpolar: 433, out of current total: 800 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 223.01489 242.80119 70.24645 89.92172 174.27400 193.88141 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 252 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 204 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 168 Spheres center of coords (x y z): 231.923130952381 77.3581392857143 185.886472916667 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 6.01129247784291 Final number of output spheres is: 45 Number of polar spheres: 16 Number of nonpolar spheres: 27 Number of spheres that are near neither polar nor nonpolar receptor atoms: 2 Final number of spheres that are from crystallographic ligand: 22