usefragsph not on There are 19 ligand heavy atoms Ligand center of coords (x y z): 84.2123157894737 260.960471052632 109.263315789474 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1379 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 772 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 772 Number of spheres polar: 234, nonpolar: 393, out of current total: 772 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 74.24313 94.18288 251.12103 270.85165 99.28224 119.08142 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 241 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 195 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 162 Spheres center of coords (x y z): 83.2990846296296 258.779884012346 112.336419444444 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 6.26255833100532 Final number of output spheres is: 45 Number of polar spheres: 13 Number of nonpolar spheres: 29 Number of spheres that are near neither polar nor nonpolar receptor atoms: 3 Final number of spheres that are from crystallographic ligand: 19