usefragsph not on There are 19 ligand heavy atoms Ligand center of coords (x y z): 84.2123157894737 260.960471052632 109.263315789474 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1379 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 772 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 772 Number of spheres polar: 234, nonpolar: 393, out of current total: 772 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 74.24313 94.18288 251.12103 270.85165 99.28224 119.08142 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 413 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 352 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 302 Spheres center of coords (x y z): 83.1085262582782 258.875886986755 112.131004271523 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.99950496270761 Final number of output spheres is: 60 Number of polar spheres: 22 Number of nonpolar spheres: 36 Number of spheres that are near neither polar nor nonpolar receptor atoms: 2 Final number of spheres that are from crystallographic ligand: 19