usefragsph not on There are 28 ligand heavy atoms Ligand center of coords (x y z): 236.473068214286 82.4359285714286 182.275250714286 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1075 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 601 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 598 Number of spheres polar: 186, nonpolar: 266, out of current total: 598 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 226.48221 246.45313 72.48584 92.43358 172.82819 191.46414 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 349 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 301 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 259 Spheres center of coords (x y z): 234.60354046332 79.0804110038611 184.146536679537 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.33933004021572 Final number of output spheres is: 60 Number of polar spheres: 20 Number of nonpolar spheres: 35 Number of spheres that are near neither polar nor nonpolar receptor atoms: 5 Final number of spheres that are from crystallographic ligand: 28