usefragsph not on There are 26 ligand heavy atoms Ligand center of coords (x y z): -6.43988461538462 56.2440769230769 -10.7512692307692 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1395 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 847 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 847 Number of spheres polar: 306, nonpolar: 416, out of current total: 847 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -16.43430 3.55347 46.30117 66.14278 -20.73473 -0.76678 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 448 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 376 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 339 Spheres center of coords (x y z): -8.60367191740413 55.7753307669617 -7.64059970501475 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 6.32324335982524 Final number of output spheres is: 60 Number of polar spheres: 28 Number of nonpolar spheres: 30 Number of spheres that are near neither polar nor nonpolar receptor atoms: 2 Final number of spheres that are from crystallographic ligand: 26