usefragsph not on There are 32 ligand heavy atoms Ligand center of coords (x y z): 36.91203125 6.08559375 13.8026875 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1331 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 696 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 695 Number of spheres polar: 187, nonpolar: 375, out of current total: 695 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 26.97239 46.88263 -3.39207 15.74602 3.80721 23.79818 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 387 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 340 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 291 Spheres center of coords (x y z): 36.1730601030928 4.36120505154639 13.8774359793814 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 4.93036733793435 Final number of output spheres is: 60 Number of polar spheres: 20 Number of nonpolar spheres: 40 Number of spheres that are near neither polar nor nonpolar receptor atoms: 0 Final number of spheres that are from crystallographic ligand: 32