usefragsph not on There are 29 ligand heavy atoms Ligand center of coords (x y z): 37.8585517241379 5.89365517241379 16.8557586206897 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1496 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 895 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 868 Number of spheres polar: 251, nonpolar: 449, out of current total: 868 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 27.90022 47.77437 -3.58605 15.87333 6.85812 26.84675 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 296 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 229 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 183 Spheres center of coords (x y z): 35.2527285245902 5.01400103825137 17.8376513114754 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 4.92033143587623 Final number of output spheres is: 45 Number of polar spheres: 14 Number of nonpolar spheres: 27 Number of spheres that are near neither polar nor nonpolar receptor atoms: 4 Final number of spheres that are from crystallographic ligand: 29