Enabling DOCK Developer Scripts incl Database Preparation Intel/Linux inactives we got past inactivesDB.ism actives we got past actives.ism node-5-16.c.bkslab.org du2 starts 1 molecule processed, 0 errors first try already in then inzinc count is 0 bzcat: Can't open input file 65: No such file or directory. bzcat: Can't open input file 93: No such file or directory. convert.py (Tripos MOL2 -> MDL SDF): mols in: 1 mols out: 1 Total: 1 mols processed. count is 0 nothing to compress bzcat: Can't open input file 65: No such file or directory. bzcat: Can't open input file 93: No such file or directory. nothing to compress du2.csh script updated ligand processing Traceback (most recent call last): File "/raid5/people/mysinger/xyz/dockenv/etc/xmlclient.py", line 147, in ? result = server.decoys(data) File "/usr/lib64/python2.4/xmlrpclib.py", line 1096, in __call__ return self.__send(self.__name, args) File "/usr/lib64/python2.4/xmlrpclib.py", line 1383, in __request verbose=self.__verbose File "/usr/lib64/python2.4/xmlrpclib.py", line 1147, in request return self._parse_response(h.getfile(), sock) File "/usr/lib64/python2.4/xmlrpclib.py", line 1286, in _parse_response return u.close() File "/usr/lib64/python2.4/xmlrpclib.py", line 744, in close raise Fault(**self._stack[0]) xmlrpclib.Fault: MakeDOCK 2.0, modified by J.Irwin and M.Mysinger. Previous versions by D.M.Lorber, B.Q.Wei, A.N.Kirschner, and N.Huang Using scripts in /raid5/people/mysinger/xyz/dockenv. Creating binding-site residue list Creating molecular surface real 0m1.389s user 0m0.242s sys 0m0.132s Creating sphgen spheres Enter name of sphere cluster file: Enter cluster number to process (<0 = all): Generate surfaces as well as pdb files (/Y)? Enter name for output PDB file name: Cluster 0:1578 spheres. 96. 96. 96. 96. 96. 96. 96. 96. 96. 96. 97. 97. 97. 99. 99. 99. 99. 99. 100. 100. 100. 100. 100. 100. 100. 101. 101. 101. 102. 102. 102. 102. 102. 102. 102. 102. 102. 102. 102. 102. 102. 102. 102. 102. 102. 102. 102. 102. 102. 103. 106. 106. 106. 106. 106. 107. 107. 107. 107. 107. 107. 107. 107. 107. 107. 107. 109. 109. 109. 111. 114. 114. 114. 114. 114. 117. 117. 117. 117. 117. 117. 117. 117. 117. 117. 117. 118. 118. 118. 118. 118. 118. 118. 118. 118. 118. 118. 118. 118. 118. 118. 118. 118. 118. 155. 155. 157. 157. 157. 157. 157. 157. 157. 157. 160. 161. 161. 161. 161. 161. 161. 161. 162. 162. 162. 164. 164. 164. 164. 164. 164. 164. 164. 164. 164. 164. 164. 164. 169. 169. 169. 169. 169. 169. 169. 169. 169. 169. 169. 169. 169. 169. 170. 170. 170. 170. 170. 170. 170. 170. 172. 172. 172. 172. 172. 172. 172. 172. 172. 172. 172. 172. 172. 172. 172. 172. 172. 172. 172. 172. 180. 180. 180. 180. 185. 185. 185. 187. 187. 187. 187. 187. 187. 187. 187. 187. 187. 187. 187. 187. 187. 187. 188. 188. 188. 188. 188. 188. 191. 193. 193. 193. 193. 193. 193. 193. 193. 193. 193. 193. 193. 193. 194. 194. 196. 196. 196. 196. 200. 200. 200. 200. 200. 200. 200. 200. 200. 200. 200. 200. 200. 201. 201. 201. 201. 205. 206. 206. 206. 206. 206. 206. 206. 206. 206. 206. 206. 206. 206. 215. 215. 215. 215. 216. 216. 216. 216. 216. 216. 216. 216. 216. 216. 216. 216. 216. 216. 216. 216. 216. 217. 217. 220. 220. 220. 220. 220. 221. 222. 222. 222. 222. 222. 222. 222. 222. 222. 222. 222. 223. 223. 223. 223. 223. 223. 223. 223. 224. 224. 224. 224. 224. 224. 224. 224. 224. 224. 224. 224. 224. 224. 224. 224. 224. 224. 224. 224. 224. 224. 224. 224. 225. 225. 225. 225. 226. 226. 226. 226. 226. 226. 226. 226. 226. 226. 226. 226. 226. 226. 226. 226. 227. 227. 227. 227. 227. 227. 228. 228. 228. 228. 228. 228. 228. 228. 228. 228. 228. 228. 228. 228. 228. 228. 228. 228. 228. 228. 228. 228. 236. 236. 236. 238. 238. 238. 238. 241. 241. 241. 241. 241. 241. 241. 241. 241. 241. 241. 241. 241. 241. 241. 244. 244. 244. 244. 244. 249. 249. 249. 249. 249. 249. 249. 250. 251. 251. 252. 252. 252. 252. 252. 252. 252. 252. 252. 252. 252. 252. 252. 252. 252. 252. 252. 252. 252. 252. 252. 252. 252. 252. 252. 253. 253. 253. 253. 253. 253. 253. 253. 253. 253. 253. 253. 253. 253. 253. 253. 253. 253. 253. 253. 253. 253. 253. 253. 253. 253. 253. 254. 254. 254. 254. 254. 254. 254. 254. 254. 254. 254. 254. 254. 254. 254. 256. 258. 260. 260. 260. 260. 260. 260. 260. 261. 261. 261. 261. 262. 262. 262. 262. 263. 263. 263. 294. 294. 294. 294. 294. 294. 294. 294. 294. 294. 295. 295. 295. 295. 295. 295. 295. 295. 295. 295. 295. 295. 295. 295. 295. 295. 295. 507. 507. 507. 507. 507. 507. 507. 508. 508. 508. 508. 510. 510. 510. 513. 513. 513. 521. 521. 521. 521. 521. 521. 521. 521. 521. 521. 521. 521. 521. 521. 521. 521. 521. 521. 521. 521. 521. 522. 522. 522. 522. 522. 522. 522. 528. 528. 528. 528. 528. 528. 528. 528. 528. 528. 528. 528. 528. 528. 528. 528. 528. 528. 528. 528. 528. 528. 528. 528. 528. 528. 528. 528. 528. 528. 528. 528. 528. 528. 528. 528. 528. 528. 528. 528. 528. 528. 528. 528. 528. 528. 528. 533. 533. 533. 533. 533. 539. 540. 540. 540. 541. 541. 541. 541. 541. 541. 541. 541. 541. 543. 543. 543. 543. 544. 544. 544. 544. 544. 544. 544. 544. 546. 546. 547. 549. 549. 549. 549. 565. 566. 566. 566. 566. 566. 566. 566. 566. 566. 566. 566. 566. 566. 566. 566. 566. 566. 566. 566. 566. 566. 566. 566. 566. 566. 566. 566. 566. 566. 566. 566. 566. 571. 571. 574. 574. 576. 580. 580. 580. 580. 580. 587. 587. 587. 587. 587. 587. 587. 587. 587. 587. 587. 587. 587. 587. 587. 587. 587. 587. 587. 587. 587. 587. 587. 587. 587. 589. 589. 596. 596. 596. 600. 600. 600. 600. 600. 600. 600. 600. 600. 601. 601. 601. 601. 601. 601. 601. 601. 601. 601. 601. 601. 601. 602. 602. 602. 603. 603. 603. 603. 603. 603. 603. 603. 603. 603. 603. 603. 603. 604. 604. 604. 605. 700. 700. 703. 703. 703. 703. 703. 703. 703. 703. 703. 703. 703. 703. 703. 703. 703. 711. 711. 711. 711. 711. 711. 711. 711. 711. 711. 711. 711. 711. 711. 713. 713. 713. 713. 713. 713. 713. 713. 713. 713. 713. 713. 713. 713. 716. 716. 716. 741. 741. 741. 741. 802. 802. 802. 802. 802. 802. 802. 802. 802. 802. 802. 802. 802. 803. 803. 803. 803. 803. 803. 803. 803. 803. 803. 818. 818. 818. 818. 818. 818. 826. 826. 826. 826. 826. 826. 826. 826. 826. 826. 827. 828. 828. 828. 829. 829. 829. 829. 829. 829. 829. 829. 829. 829. 829. 829. 829. 829. 829. 829. 829. 829. 831. 831. 832. 832. 836. 836. 836. 836. 836. 836. 836. 836. 836. 837. 837. 837. 837. 837. 837. 837. 837. 837. 837. 837. 837. 837. 837. 837. 837. 837. 837. 842. 842. 842. 842. 842. 842. 842. 842. 842. 842. 842. 842. 842. 842. 842. 844. 847. 847. 848. 849. 849. 849. 849. 852. 854. 854. 854. 854. 854. 854. 854. 854. 854. 854. 854. 854. 854. 854. 854. 854. 854. 854. 854. 855. 855. 855. 855. 855. 855. 855. 855. 855. 855. 855. 855. 855. 855. 855. 855. 855. 855. 855. 855. 858. 858. 858. 858. 858. 858. 858. 858. 858. 860. 860. 864. 864. 864. 864. 865. 865. 865. 865. 866. 866. 866. 866. 866. 866. 866. 866. 866. 866. 874. 878. 878. 878. 878. 878. 878. 878. 878. 878. 879. 879. 879. 880. 880. 880. 880. 880. 883. 883. 883. 883. 883. 883. 883. 883. 883. 890. 890. 891. 892. 892. 892. 892. 892. 892. 892. 892. 892. 899. 900. 900. 900. 900. 900. 900. 900. 900. 900. 900. 900. 900. 900. 901. 902. 902. 902. 902. 902. 902. 902. 902. 902. 902. 902. 902. 902. 902. 902. 902. 902. 902. 902. 902. 902. 902. 902. 902.1358.1360.1360.1360.1360.1360.1360.1360.1360.1360.1360.1360.1360.1360.1360.1360.1360.1360.1363.1363.1363.1363.1383.1383.1383.1383.1388.1388.1388.1388.1388.1388.1388.1388.1388.1388.1389.1389.1389.1394.1394.1395.1395.1395.1398.1398.1398.1401.1401.1401.1401.1401.1401.1401.1401.1401.1401.1401.1402.1402.1402.1402.1402.1404.1407.1407.1407.1408.1408.1408.1408.1408.1408.1408.1408.1409.1409.1409.1409.1409.1409.1409.1409.1409.1409.1409.1409.1409.1409.1409.1409.1409.1409.1409.1409.1409.1409.1409.1409.1409.1410.1410.1410.1414.1414.1416.1416.1416.1417.1417.1417.1417.1417.1417.1425.1425.1425.1425.1425.1425.1425.1425.1425.1425.1425.1425.1425.1425.1425.1425.1425.1425.1428.1428.1430.1430.1430.1431.1431.1432.1432.1432.1432.1432.1432.1432.1432.1432.1432.1432.1432.1432.1432.1432.1432.1433.1433.1434.1434.1434.1434.1434.1434.1434.1434.1435.1440.1442.1442.1442.1442.1442.1442.1442.1443.1443.1443.1443.1443.1443.1444.1444.1444.1444.1444.1444.1444.1444.1444.1444.1444.1444.1445.1445.1446.1446.1446.1446.1446.1446.1446.1446.1446.1446.1446.1446.1446.1448.1448.1451.1451.1451.1451.1451.1452.1452.1452.1452.1452.1452.1452.1460.1460.1460.1460.1460.1460.1462.1462.1462.1462.1462.1462.1462.1462.1462.1462.1462.1462.1462.1462.1462.1462.1465.1468.1468.1468.1468.1468.1468.1468.1470.1470.1470.1470.1470.1470.1470.1470.1470.1472.1473.1473.1473.1473.1473.1473.1473.1473.1473.1473.1473.1473.1473.1473.1475.1475.1475.1480.1480.1480.1482.1482.1482.1482.1486.1486.1490.1490.1491.1491.1491.1491.1491.1491.1491.1492.1492.1492.1492.1492.1492.1492.1493.1495.1495.1495.1497.1497.1497.1498.1498.1498.1498.1498.1499.1499.1499.1499.1500.1502.1502.1502.1502.1502.1503.1503.1503.1503.1503.1503.1503.1503.1503.1503.1503.1503.1503.1504.1504.1504.1516.1516.1517.1518.1518.1518.1518.1518.1518.1518.1519.1519.1519.1519.1531.1533.1534.1534.1534.1534.1534.1534.1534.1534.1534.1536.1536.1536.1536.1536.1536.1536.1536.1536.1536.1536.1536.1536.1536.1536.1536.1536.1536.1536.1536.1537.1537.1537.1537.1537.1537.1537.1537.1537.1537.1537.1537.1537.1537.1537.1540.1540.1541.1541.1541.1541.1541.1542.1542.1542.1542.1542.1542.1542.1547.1551.1554.1554.1554.1554.1554.1554.1554.1554.1554.1554.1554.1554.1554.1554.1554.1554.1554.1554.1554.1554.1554.1554.1554.1554.1555.1557.1557.1557.1558.1558.1558.1559.1559.1559.1559.1559.1559.1559.1559.1565.1567.1567.1567.1567.1567.1567.1567.1567.1567.1567.1570.1570.1570.1570.1570.1570.1570.1570.1570.1570.1570.1570.1570.1570.1571.1572.1591.1591.1591.1591.1591.1591.1591.FORTRAN STOP Converting ligand atoms to spheres Enter name of sphere cluster file: Enter cluster number to process (<0 = all): Generate surfaces as well as pdb files (/Y)? Enter name for output PDB file name: Cluster 1: 23 spheres. 1. 2. 3. 4. 5. 6. 7. 8. 9. 10. 11. 12. 13. 14. 15. 16. 17. 18. 19. 20. 21. 22. 23.FORTRAN STOP Adding essential hydrogens to receptor Generating matching spheres for delphi Enter name of sphere cluster file: Enter cluster number to process (<0 = all): Generate surfaces as well as pdb files (/Y)? Enter name for output PDB file name: Cluster 1: 65 spheres. 9001.9002.9003.9004.9005.9006.9007.9008.9009.9010.9011.9012.9013.9014.9015.9016.9017.9018.9019.9020.9021.9022.9023.9024.9025.9026.9027.9028.9029.9030.9031.9032.9033.9034.9035.9036.9037.9038.9039.9040.9041.9042.9043.9044.9045.9046.9047.9048.9049.9050.9051.9052.9053.9054.9055.9056.9057.9058.9059.9060.9061.9062.9063.9064.9065.FORTRAN STOP Generating faster matching2 spheres for docking Enter name of sphere cluster file: Enter cluster number to process (<0 = all): Generate surfaces as well as pdb files (/Y)? Enter name for output PDB file name: Cluster 1: 45 spheres. 9001.9002.9003.9004.9005.9006.9007.9008.9009.9010.9011.9012.9013.9014.9015.9016.9017.9018.9019.9020.9021.9022.9023.9024.9025.9026.9027.9028.9029.9030.9031.9032.9033.9034.9035.9036.9037.9038.9039.9040.9041.9042.9043.9044.9045.FORTRAN STOP Coloring matching spheres Generating slower matching3 spheres for docking Enter name of sphere cluster file: Enter cluster number to process (<0 = all): Generate surfaces as well as pdb files (/Y)? Enter name for output PDB file name: Cluster 1: 60 spheres. 9001.9002.9003.9004.9005.9006.9007.9008.9009.9010.9011.9012.9013.9014.9015.9016.9017.9018.9019.9020.9021.9022.9023.9024.9025.9026.9027.9028.9029.9030.9031.9032.9033.9034.9035.9036.9037.9038.9039.9040.9041.9042.9043.9044.9045.9046.9047.9048.9049.9050.9051.9052.9053.9054.9055.9056.9057.9058.9059.9060.FORTRAN STOP Coloring matching spheres Adding spheres to electrostatic grid Creating DelPhi electrostatic grid real 0m28.840s user 0m25.070s sys 0m0.711s Adding spheres to tarted electrostatic grid we had to cook * NE2* we had to cook *HNE2* we had to cook *HNE1* Creating DelPhi electrostatic grid real 0m29.815s user 0m26.058s sys 0m0.831s Creating box around spheres Creating chemgrid maps real 0m13.444s user 0m10.857s sys 0m0.329s Atomic solvent excluded volume calculations underway FORTRAN STOP real 20m49.378s user 20m47.736s sys 0m0.165s Checking for WARNINGS in OUTPARM. Checking for WARNINGS in delphi.log. End of MakeDOCK sphere and grid generation. Grid preparation completed normally. cat: .decjob: No such file or directory [z]inc2smi or [c]atfile? Traceback (most recent call last): File "/raid5/people/mysinger/xyz/dockenv/etc/xmlclient.py", line 26, in ? flag = raw_input('[z]inc2smi or [c]atfile? ') EOFError: EOF when reading a line slept 360 waiting for decoys [z]inc2smi or [c]atfile? Traceback (most recent call last): File "/raid5/people/mysinger/xyz/dockenv/etc/xmlclient.py", line 26, in ? flag = raw_input('[z]inc2smi or [c]atfile? ') EOFError: EOF when reading a line slept 360 waiting for decoys [z]inc2smi or [c]atfile? Traceback (most recent call last): File "/raid5/people/mysinger/xyz/dockenv/etc/xmlclient.py", line 26, in ? flag = raw_input('[z]inc2smi or [c]atfile? ') EOFError: EOF when reading a line slept 360 waiting for decoys [z]inc2smi or [c]atfile? Traceback (most recent call last): File "/raid5/people/mysinger/xyz/dockenv/etc/xmlclient.py", line 26, in ? flag = raw_input('[z]inc2smi or [c]atfile? ') EOFError: EOF when reading a line slept 360 waiting for decoys [z]inc2smi or [c]atfile? Traceback (most recent call last): File "/raid5/people/mysinger/xyz/dockenv/etc/xmlclient.py", line 26, in ? flag = raw_input('[z]inc2smi or [c]atfile? ') EOFError: EOF when reading a line slept 360 waiting for decoys [z]inc2smi or [c]atfile? Traceback (most recent call last): File "/raid5/people/mysinger/xyz/dockenv/etc/xmlclient.py", line 26, in ? flag = raw_input('[z]inc2smi or [c]atfile? ') EOFError: EOF when reading a line slept 360 waiting for decoys [z]inc2smi or [c]atfile? Traceback (most recent call last): File "/raid5/people/mysinger/xyz/dockenv/etc/xmlclient.py", line 26, in ? flag = raw_input('[z]inc2smi or [c]atfile? ') EOFError: EOF when reading a line slept 360 waiting for decoys [z]inc2smi or [c]atfile? Traceback (most recent call last): File "/raid5/people/mysinger/xyz/dockenv/etc/xmlclient.py", line 26, in ? flag = raw_input('[z]inc2smi or [c]atfile? ') EOFError: EOF when reading a line slept 360 waiting for decoys [z]inc2smi or [c]atfile? Traceback (most recent call last): File "/raid5/people/mysinger/xyz/dockenv/etc/xmlclient.py", line 26, in ? flag = raw_input('[z]inc2smi or [c]atfile? ') EOFError: EOF when reading a line slept 360 waiting for decoys [z]inc2smi or [c]atfile? Traceback (most recent call last): File "/raid5/people/mysinger/xyz/dockenv/etc/xmlclient.py", line 26, in ? flag = raw_input('[z]inc2smi or [c]atfile? ') EOFError: EOF when reading a line slept 360 waiting for decoys [z]inc2smi or [c]atfile? Traceback (most recent call last): File "/raid5/people/mysinger/xyz/dockenv/etc/xmlclient.py", line 26, in ? flag = raw_input('[z]inc2smi or [c]atfile? ') EOFError: EOF when reading a line slept 360 waiting for decoys [z]inc2smi or [c]atfile? Traceback (most recent call last): File "/raid5/people/mysinger/xyz/dockenv/etc/xmlclient.py", line 26, in ? flag = raw_input('[z]inc2smi or [c]atfile? ') EOFError: EOF when reading a line slept 360 waiting for decoys [z]inc2smi or [c]atfile? Traceback (most recent call last): File "/raid5/people/mysinger/xyz/dockenv/etc/xmlclient.py", line 26, in ? flag = raw_input('[z]inc2smi or [c]atfile? ') EOFError: EOF when reading a line slept 360 waiting for decoys [z]inc2smi or [c]atfile? Traceback (most recent call last): File "/raid5/people/mysinger/xyz/dockenv/etc/xmlclient.py", line 26, in ? flag = raw_input('[z]inc2smi or [c]atfile? ') EOFError: EOF when reading a line slept 360 waiting for decoys [z]inc2smi or [c]atfile? Traceback (most recent call last): File "/raid5/people/mysinger/xyz/dockenv/etc/xmlclient.py", line 26, in ? flag = raw_input('[z]inc2smi or [c]atfile? ') EOFError: EOF when reading a line slept 360 waiting for decoys [z]inc2smi or [c]atfile? Traceback (most recent call last): File "/raid5/people/mysinger/xyz/dockenv/etc/xmlclient.py", line 26, in ? flag = raw_input('[z]inc2smi or [c]atfile? ') EOFError: EOF when reading a line slept 360 waiting for decoys [z]inc2smi or [c]atfile? Traceback (most recent call last): File "/raid5/people/mysinger/xyz/dockenv/etc/xmlclient.py", line 26, in ? flag = raw_input('[z]inc2smi or [c]atfile? ') EOFError: EOF when reading a line slept 360 waiting for decoys [z]inc2smi or [c]atfile? Traceback (most recent call last): File "/raid5/people/mysinger/xyz/dockenv/etc/xmlclient.py", line 26, in ? flag = raw_input('[z]inc2smi or [c]atfile? ') EOFError: EOF when reading a line slept 360 waiting for decoys [z]inc2smi or [c]atfile? Traceback (most recent call last): File "/raid5/people/mysinger/xyz/dockenv/etc/xmlclient.py", line 26, in ? flag = raw_input('[z]inc2smi or [c]atfile? ') EOFError: EOF when reading a line slept 360 waiting for decoys [z]inc2smi or [c]atfile? Traceback (most recent call last): File "/raid5/people/mysinger/xyz/dockenv/etc/xmlclient.py", line 26, in ? flag = raw_input('[z]inc2smi or [c]atfile? ') EOFError: EOF when reading a line slept 360 waiting for decoys [z]inc2smi or [c]atfile? Traceback (most recent call last): File "/raid5/people/mysinger/xyz/dockenv/etc/xmlclient.py", line 26, in ? flag = raw_input('[z]inc2smi or [c]atfile? ') EOFError: EOF when reading a line slept 360 waiting for decoys [z]inc2smi or [c]atfile? Traceback (most recent call last): File "/raid5/people/mysinger/xyz/dockenv/etc/xmlclient.py", line 26, in ? flag = raw_input('[z]inc2smi or [c]atfile? ') EOFError: EOF when reading a line slept 360 waiting for decoys [z]inc2smi or [c]atfile? Traceback (most recent call last): File "/raid5/people/mysinger/xyz/dockenv/etc/xmlclient.py", line 26, in ? flag = raw_input('[z]inc2smi or [c]atfile? ') EOFError: EOF when reading a line slept 360 waiting for decoys [z]inc2smi or [c]atfile? Traceback (most recent call last): File "/raid5/people/mysinger/xyz/dockenv/etc/xmlclient.py", line 26, in ? flag = raw_input('[z]inc2smi or [c]atfile? ') EOFError: EOF when reading a line slept 360 waiting for decoys [z]inc2smi or [c]atfile? Traceback (most recent call last): File "/raid5/people/mysinger/xyz/dockenv/etc/xmlclient.py", line 26, in ? flag = raw_input('[z]inc2smi or [c]atfile? ') EOFError: EOF when reading a line slept 360 waiting for decoys [z]inc2smi or [c]atfile? Traceback (most recent call last): File "/raid5/people/mysinger/xyz/dockenv/etc/xmlclient.py", line 26, in ? flag = raw_input('[z]inc2smi or [c]atfile? ') EOFError: EOF when reading a line slept 360 waiting for decoys [z]inc2smi or [c]atfile? Traceback (most recent call last): File "/raid5/people/mysinger/xyz/dockenv/etc/xmlclient.py", line 26, in ? flag = raw_input('[z]inc2smi or [c]atfile? ') EOFError: EOF when reading a line slept 360 waiting for decoys [z]inc2smi or [c]atfile? Traceback (most recent call last): File "/raid5/people/mysinger/xyz/dockenv/etc/xmlclient.py", line 26, in ? flag = raw_input('[z]inc2smi or [c]atfile? ') EOFError: EOF when reading a line slept 360 waiting for decoys [z]inc2smi or [c]atfile? Traceback (most recent call last): File "/raid5/people/mysinger/xyz/dockenv/etc/xmlclient.py", line 26, in ? flag = raw_input('[z]inc2smi or [c]atfile? ') EOFError: EOF when reading a line slept 360 waiting for decoys [z]inc2smi or [c]atfile? Traceback (most recent call last): File "/raid5/people/mysinger/xyz/dockenv/etc/xmlclient.py", line 26, in ? flag = raw_input('[z]inc2smi or [c]atfile? ') EOFError: EOF when reading a line slept 360 waiting for decoys [z]inc2smi or [c]atfile? Traceback (most recent call last): File "/raid5/people/mysinger/xyz/dockenv/etc/xmlclient.py", line 26, in ? flag = raw_input('[z]inc2smi or [c]atfile? ') EOFError: EOF when reading a line slept 360 waiting for decoys [z]inc2smi or [c]atfile? Traceback (most recent call last): File "/raid5/people/mysinger/xyz/dockenv/etc/xmlclient.py", line 26, in ? flag = raw_input('[z]inc2smi or [c]atfile? ') EOFError: EOF when reading a line slept 360 waiting for decoys [z]inc2smi or [c]atfile? Traceback (most recent call last): File "/raid5/people/mysinger/xyz/dockenv/etc/xmlclient.py", line 26, in ? flag = raw_input('[z]inc2smi or [c]atfile? ') EOFError: EOF when reading a line slept 360 waiting for decoys [z]inc2smi or [c]atfile? Traceback (most recent call last): File "/raid5/people/mysinger/xyz/dockenv/etc/xmlclient.py", line 26, in ? flag = raw_input('[z]inc2smi or [c]atfile? ') EOFError: EOF when reading a line slept 360 waiting for decoys [z]inc2smi or [c]atfile? Traceback (most recent call last): File "/raid5/people/mysinger/xyz/dockenv/etc/xmlclient.py", line 26, in ? flag = raw_input('[z]inc2smi or [c]atfile? ') EOFError: EOF when reading a line slept 360 waiting for decoys [z]inc2smi or [c]atfile? Traceback (most recent call last): File "/raid5/people/mysinger/xyz/dockenv/etc/xmlclient.py", line 26, in ? flag = raw_input('[z]inc2smi or [c]atfile? ') EOFError: EOF when reading a line slept 360 waiting for decoys [z]inc2smi or [c]atfile? Traceback (most recent call last): File "/raid5/people/mysinger/xyz/dockenv/etc/xmlclient.py", line 26, in ? flag = raw_input('[z]inc2smi or [c]atfile? ') EOFError: EOF when reading a line slept 360 waiting for decoys [z]inc2smi or [c]atfile? Traceback (most recent call last): File "/raid5/people/mysinger/xyz/dockenv/etc/xmlclient.py", line 26, in ? flag = raw_input('[z]inc2smi or [c]atfile? ') EOFError: EOF when reading a line slept 360 waiting for decoys [z]inc2smi or [c]atfile? Traceback (most recent call last): File "/raid5/people/mysinger/xyz/dockenv/etc/xmlclient.py", line 26, in ? flag = raw_input('[z]inc2smi or [c]atfile? ') EOFError: EOF when reading a line slept 360 waiting for decoys [z]inc2smi or [c]atfile? Traceback (most recent call last): File "/raid5/people/mysinger/xyz/dockenv/etc/xmlclient.py", line 26, in ? flag = raw_input('[z]inc2smi or [c]atfile? ') EOFError: EOF when reading a line slept 360 waiting for decoys [z]inc2smi or [c]atfile? Traceback (most recent call last): File "/raid5/people/mysinger/xyz/dockenv/etc/xmlclient.py", line 26, in ? flag = raw_input('[z]inc2smi or [c]atfile? ') EOFError: EOF when reading a line slept 360 waiting for decoys [z]inc2smi or [c]atfile? Traceback (most recent call last): File "/raid5/people/mysinger/xyz/dockenv/etc/xmlclient.py", line 26, in ? flag = raw_input('[z]inc2smi or [c]atfile? ') EOFError: EOF when reading a line slept 360 waiting for decoys [z]inc2smi or [c]atfile? Traceback (most recent call last): File "/raid5/people/mysinger/xyz/dockenv/etc/xmlclient.py", line 26, in ? flag = raw_input('[z]inc2smi or [c]atfile? ') EOFError: EOF when reading a line slept 360 waiting for decoys [z]inc2smi or [c]atfile? Traceback (most recent call last): File "/raid5/people/mysinger/xyz/dockenv/etc/xmlclient.py", line 26, in ? flag = raw_input('[z]inc2smi or [c]atfile? ') EOFError: EOF when reading a line slept 360 waiting for decoys [z]inc2smi or [c]atfile? Traceback (most recent call last): File "/raid5/people/mysinger/xyz/dockenv/etc/xmlclient.py", line 26, in ? flag = raw_input('[z]inc2smi or [c]atfile? ') EOFError: EOF when reading a line slept 360 waiting for decoys [z]inc2smi or [c]atfile? Traceback (most recent call last): File "/raid5/people/mysinger/xyz/dockenv/etc/xmlclient.py", line 26, in ? flag = raw_input('[z]inc2smi or [c]atfile? ') EOFError: EOF when reading a line slept 360 waiting for decoys [z]inc2smi or [c]atfile? Traceback (most recent call last): File "/raid5/people/mysinger/xyz/dockenv/etc/xmlclient.py", line 26, in ? flag = raw_input('[z]inc2smi or [c]atfile? ') EOFError: EOF when reading a line slept 360 waiting for decoys [z]inc2smi or [c]atfile? Traceback (most recent call last): File "/raid5/people/mysinger/xyz/dockenv/etc/xmlclient.py", line 26, in ? flag = raw_input('[z]inc2smi or [c]atfile? ') EOFError: EOF when reading a line slept 360 waiting for decoys [z]inc2smi or [c]atfile? Traceback (most recent call last): File "/raid5/people/mysinger/xyz/dockenv/etc/xmlclient.py", line 26, in ? flag = raw_input('[z]inc2smi or [c]atfile? ') EOFError: EOF when reading a line slept 360 waiting for decoys [z]inc2smi or [c]atfile? Traceback (most recent call last): File "/raid5/people/mysinger/xyz/dockenv/etc/xmlclient.py", line 26, in ? flag = raw_input('[z]inc2smi or [c]atfile? ') EOFError: EOF when reading a line slept 360 waiting for decoys [z]inc2smi or [c]atfile? Traceback (most recent call last): File "/raid5/people/mysinger/xyz/dockenv/etc/xmlclient.py", line 26, in ? flag = raw_input('[z]inc2smi or [c]atfile? ') EOFError: EOF when reading a line slept 360 waiting for decoys [z]inc2smi or [c]atfile? Traceback (most recent call last): File "/raid5/people/mysinger/xyz/dockenv/etc/xmlclient.py", line 26, in ? flag = raw_input('[z]inc2smi or [c]atfile? ') EOFError: EOF when reading a line slept 360 waiting for decoys [z]inc2smi or [c]atfile? Traceback (most recent call last): File "/raid5/people/mysinger/xyz/dockenv/etc/xmlclient.py", line 26, in ? flag = raw_input('[z]inc2smi or [c]atfile? ') EOFError: EOF when reading a line slept 360 waiting for decoys [z]inc2smi or [c]atfile? Traceback (most recent call last): File "/raid5/people/mysinger/xyz/dockenv/etc/xmlclient.py", line 26, in ? flag = raw_input('[z]inc2smi or [c]atfile? ') EOFError: EOF when reading a line slept 360 waiting for decoys [z]inc2smi or [c]atfile? Traceback (most recent call last): File "/raid5/people/mysinger/xyz/dockenv/etc/xmlclient.py", line 26, in ? flag = raw_input('[z]inc2smi or [c]atfile? ') EOFError: EOF when reading a line slept 360 waiting for decoys [z]inc2smi or [c]atfile? Traceback (most recent call last): File "/raid5/people/mysinger/xyz/dockenv/etc/xmlclient.py", line 26, in ? flag = raw_input('[z]inc2smi or [c]atfile? ') EOFError: EOF when reading a line slept 360 waiting for decoys [z]inc2smi or [c]atfile? Traceback (most recent call last): File "/raid5/people/mysinger/xyz/dockenv/etc/xmlclient.py", line 26, in ? flag = raw_input('[z]inc2smi or [c]atfile? ') EOFError: EOF when reading a line slept 360 waiting for decoys [z]inc2smi or [c]atfile? Traceback (most recent call last): File "/raid5/people/mysinger/xyz/dockenv/etc/xmlclient.py", line 26, in ? flag = raw_input('[z]inc2smi or [c]atfile? ') EOFError: EOF when reading a line slept 360 waiting for decoys [z]inc2smi or [c]atfile? Traceback (most recent call last): File "/raid5/people/mysinger/xyz/dockenv/etc/xmlclient.py", line 26, in ? flag = raw_input('[z]inc2smi or [c]atfile? ') EOFError: EOF when reading a line slept 360 waiting for decoys [z]inc2smi or [c]atfile? Traceback (most recent call last): File "/raid5/people/mysinger/xyz/dockenv/etc/xmlclient.py", line 26, in ? flag = raw_input('[z]inc2smi or [c]atfile? ') EOFError: EOF when reading a line slept 360 waiting for decoys [z]inc2smi or [c]atfile? Traceback (most recent call last): File "/raid5/people/mysinger/xyz/dockenv/etc/xmlclient.py", line 26, in ? flag = raw_input('[z]inc2smi or [c]atfile? ') EOFError: EOF when reading a line slept 360 waiting for decoys [z]inc2smi or [c]atfile? Traceback (most recent call last): File "/raid5/people/mysinger/xyz/dockenv/etc/xmlclient.py", line 26, in ? flag = raw_input('[z]inc2smi or [c]atfile? ') EOFError: EOF when reading a line slept 360 waiting for decoys [z]inc2smi or [c]atfile? Traceback (most recent call last): File "/raid5/people/mysinger/xyz/dockenv/etc/xmlclient.py", line 26, in ? flag = raw_input('[z]inc2smi or [c]atfile? ') EOFError: EOF when reading a line slept 360 waiting for decoys [z]inc2smi or [c]atfile? Traceback (most recent call last): File "/raid5/people/mysinger/xyz/dockenv/etc/xmlclient.py", line 26, in ? flag = raw_input('[z]inc2smi or [c]atfile? ') EOFError: EOF when reading a line slept 360 waiting for decoys [z]inc2smi or [c]atfile? Traceback (most recent call last): File "/raid5/people/mysinger/xyz/dockenv/etc/xmlclient.py", line 26, in ? flag = raw_input('[z]inc2smi or [c]atfile? ') EOFError: EOF when reading a line slept 360 waiting for decoys [z]inc2smi or [c]atfile? Traceback (most recent call last): File "/raid5/people/mysinger/xyz/dockenv/etc/xmlclient.py", line 26, in ? flag = raw_input('[z]inc2smi or [c]atfile? ') EOFError: EOF when reading a line slept 360 waiting for decoys [z]inc2smi or [c]atfile? Traceback (most recent call last): File "/raid5/people/mysinger/xyz/dockenv/etc/xmlclient.py", line 26, in ? flag = raw_input('[z]inc2smi or [c]atfile? ') EOFError: EOF when reading a line slept 360 waiting for decoys [z]inc2smi or [c]atfile? Traceback (most recent call last): File "/raid5/people/mysinger/xyz/dockenv/etc/xmlclient.py", line 26, in ? flag = raw_input('[z]inc2smi or [c]atfile? ') EOFError: EOF when reading a line slept 360 waiting for decoys [z]inc2smi or [c]atfile? Traceback (most recent call last): File "/raid5/people/mysinger/xyz/dockenv/etc/xmlclient.py", line 26, in ? flag = raw_input('[z]inc2smi or [c]atfile? ') EOFError: EOF when reading a line slept 360 waiting for decoys [z]inc2smi or [c]atfile? Traceback (most recent call last): File "/raid5/people/mysinger/xyz/dockenv/etc/xmlclient.py", line 26, in ? flag = raw_input('[z]inc2smi or [c]atfile? ') EOFError: EOF when reading a line slept 360 waiting for decoys [z]inc2smi or [c]atfile? Traceback (most recent call last): File "/raid5/people/mysinger/xyz/dockenv/etc/xmlclient.py", line 26, in ? flag = raw_input('[z]inc2smi or [c]atfile? ') EOFError: EOF when reading a line slept 360 waiting for decoys [z]inc2smi or [c]atfile? Traceback (most recent call last): File "/raid5/people/mysinger/xyz/dockenv/etc/xmlclient.py", line 26, in ? flag = raw_input('[z]inc2smi or [c]atfile? ') EOFError: EOF when reading a line slept 360 waiting for decoys [z]inc2smi or [c]atfile? Traceback (most recent call last): File "/raid5/people/mysinger/xyz/dockenv/etc/xmlclient.py", line 26, in ? flag = raw_input('[z]inc2smi or [c]atfile? ') EOFError: EOF when reading a line slept 360 waiting for decoys [z]inc2smi or [c]atfile? Traceback (most recent call last): File "/raid5/people/mysinger/xyz/dockenv/etc/xmlclient.py", line 26, in ? flag = raw_input('[z]inc2smi or [c]atfile? ') EOFError: EOF when reading a line slept 360 waiting for decoys [z]inc2smi or [c]atfile? Traceback (most recent call last): File "/raid5/people/mysinger/xyz/dockenv/etc/xmlclient.py", line 26, in ? flag = raw_input('[z]inc2smi or [c]atfile? ') EOFError: EOF when reading a line slept 360 waiting for decoys [z]inc2smi or [c]atfile? Traceback (most recent call last): File "/raid5/people/mysinger/xyz/dockenv/etc/xmlclient.py", line 26, in ? flag = raw_input('[z]inc2smi or [c]atfile? ') EOFError: EOF when reading a line slept 360 waiting for decoys [z]inc2smi or [c]atfile? Traceback (most recent call last): File "/raid5/people/mysinger/xyz/dockenv/etc/xmlclient.py", line 26, in ? flag = raw_input('[z]inc2smi or [c]atfile? ') EOFError: EOF when reading a line slept 360 waiting for decoys [z]inc2smi or [c]atfile? Traceback (most recent call last): File "/raid5/people/mysinger/xyz/dockenv/etc/xmlclient.py", line 26, in ? flag = raw_input('[z]inc2smi or [c]atfile? ') EOFError: EOF when reading a line slept 360 waiting for decoys [z]inc2smi or [c]atfile? Traceback (most recent call last): File "/raid5/people/mysinger/xyz/dockenv/etc/xmlclient.py", line 26, in ? flag = raw_input('[z]inc2smi or [c]atfile? ') EOFError: EOF when reading a line slept 360 waiting for decoys [z]inc2smi or [c]atfile? Traceback (most recent call last): File "/raid5/people/mysinger/xyz/dockenv/etc/xmlclient.py", line 26, in ? flag = raw_input('[z]inc2smi or [c]atfile? ') EOFError: EOF when reading a line slept 360 waiting for decoys [z]inc2smi or [c]atfile? Traceback (most recent call last): File "/raid5/people/mysinger/xyz/dockenv/etc/xmlclient.py", line 26, in ? flag = raw_input('[z]inc2smi or [c]atfile? ') EOFError: EOF when reading a line slept 360 waiting for decoys [z]inc2smi or [c]atfile? Traceback (most recent call last): File "/raid5/people/mysinger/xyz/dockenv/etc/xmlclient.py", line 26, in ? flag = raw_input('[z]inc2smi or [c]atfile? ') EOFError: EOF when reading a line slept 360 waiting for decoys [z]inc2smi or [c]atfile? Traceback (most recent call last): File "/raid5/people/mysinger/xyz/dockenv/etc/xmlclient.py", line 26, in ? flag = raw_input('[z]inc2smi or [c]atfile? ') EOFError: EOF when reading a line slept 360 waiting for decoys [z]inc2smi or [c]atfile? Traceback (most recent call last): File "/raid5/people/mysinger/xyz/dockenv/etc/xmlclient.py", line 26, in ? flag = raw_input('[z]inc2smi or [c]atfile? ') EOFError: EOF when reading a line slept 360 waiting for decoys [z]inc2smi or [c]atfile? Traceback (most recent call last): File "/raid5/people/mysinger/xyz/dockenv/etc/xmlclient.py", line 26, in ? flag = raw_input('[z]inc2smi or [c]atfile? ') EOFError: EOF when reading a line slept 360 waiting for decoys [z]inc2smi or [c]atfile? Traceback (most recent call last): File "/raid5/people/mysinger/xyz/dockenv/etc/xmlclient.py", line 26, in ? flag = raw_input('[z]inc2smi or [c]atfile? ') EOFError: EOF when reading a line slept 360 waiting for decoys [z]inc2smi or [c]atfile? Traceback (most recent call last): File "/raid5/people/mysinger/xyz/dockenv/etc/xmlclient.py", line 26, in ? flag = raw_input('[z]inc2smi or [c]atfile? ') EOFError: EOF when reading a line slept 360 waiting for decoys [z]inc2smi or [c]atfile? Traceback (most recent call last): File "/raid5/people/mysinger/xyz/dockenv/etc/xmlclient.py", line 26, in ? flag = raw_input('[z]inc2smi or [c]atfile? ') EOFError: EOF when reading a line slept 360 waiting for decoys [z]inc2smi or [c]atfile? Traceback (most recent call last): File "/raid5/people/mysinger/xyz/dockenv/etc/xmlclient.py", line 26, in ? flag = raw_input('[z]inc2smi or [c]atfile? ') EOFError: EOF when reading a line slept 360 waiting for decoys [z]inc2smi or [c]atfile? Traceback (most recent call last): File "/raid5/people/mysinger/xyz/dockenv/etc/xmlclient.py", line 26, in ? flag = raw_input('[z]inc2smi or [c]atfile? ') EOFError: EOF when reading a line slept 360 waiting for decoys [z]inc2smi or [c]atfile? Traceback (most recent call last): File "/raid5/people/mysinger/xyz/dockenv/etc/xmlclient.py", line 26, in ? flag = raw_input('[z]inc2smi or [c]atfile? ') EOFError: EOF when reading a line slept 360 waiting for decoys [z]inc2smi or [c]atfile? Traceback (most recent call last): File "/raid5/people/mysinger/xyz/dockenv/etc/xmlclient.py", line 26, in ? flag = raw_input('[z]inc2smi or [c]atfile? ') EOFError: EOF when reading a line slept 360 waiting for decoys [z]inc2smi or [c]atfile? Traceback (most recent call last): File "/raid5/people/mysinger/xyz/dockenv/etc/xmlclient.py", line 26, in ? flag = raw_input('[z]inc2smi or [c]atfile? ') EOFError: EOF when reading a line slept 360 waiting for decoys [z]inc2smi or [c]atfile? Traceback (most recent call last): File "/raid5/people/mysinger/xyz/dockenv/etc/xmlclient.py", line 26, in ? flag = raw_input('[z]inc2smi or [c]atfile? ') EOFError: EOF when reading a line slept 360 waiting for decoys [z]inc2smi or [c]atfile? Traceback (most recent call last): File "/raid5/people/mysinger/xyz/dockenv/etc/xmlclient.py", line 26, in ? flag = raw_input('[z]inc2smi or [c]atfile? ') EOFError: EOF when reading a line slept 360 waiting for decoys [z]inc2smi or [c]atfile? Traceback (most recent call last): File "/raid5/people/mysinger/xyz/dockenv/etc/xmlclient.py", line 26, in ? flag = raw_input('[z]inc2smi or [c]atfile? ') EOFError: EOF when reading a line slept 360 waiting for decoys [z]inc2smi or [c]atfile? Traceback (most recent call last): File "/raid5/people/mysinger/xyz/dockenv/etc/xmlclient.py", line 26, in ? flag = raw_input('[z]inc2smi or [c]atfile? ') EOFError: EOF when reading a line slept 360 waiting for decoys [z]inc2smi or [c]atfile? Traceback (most recent call last): File "/raid5/people/mysinger/xyz/dockenv/etc/xmlclient.py", line 26, in ? flag = raw_input('[z]inc2smi or [c]atfile? ') EOFError: EOF when reading a line slept 360 waiting for decoys [z]inc2smi or [c]atfile? Traceback (most recent call last): File "/raid5/people/mysinger/xyz/dockenv/etc/xmlclient.py", line 26, in ? flag = raw_input('[z]inc2smi or [c]atfile? ') EOFError: EOF when reading a line slept 360 waiting for decoys [z]inc2smi or [c]atfile? Traceback (most recent call last): File "/raid5/people/mysinger/xyz/dockenv/etc/xmlclient.py", line 26, in ? flag = raw_input('[z]inc2smi or [c]atfile? ') EOFError: EOF when reading a line slept 360 waiting for decoys failed to get decoys