usefragsph not on There are 23 ligand heavy atoms Ligand center of coords (x y z): 122.598217391304 -23.311347826087 12.0082173913043 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1578 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 428 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 428 Number of spheres polar: 135, nonpolar: 251, out of current total: 428 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 112.63895 132.59532 -33.29655 -13.34091 4.89753 21.81199 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 142 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 110 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 69 Spheres center of coords (x y z): 122.82271 -23.7201353623188 12.1887444927536 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 1.90733483143826 Final number of output spheres is: 45 Number of polar spheres: 14 Number of nonpolar spheres: 27 Number of spheres that are near neither polar nor nonpolar receptor atoms: 4 Final number of spheres that are from crystallographic ligand: 23