DOCK version 3.5.54, compiled on 20110906 CPU, Date, and Time: node-5-13.c.bkslab.org 26-Jan-12 19:48:03 Solvation type: context-dependent ligand desolvation Internal Distance Clashes will be checked Receptor spheres: ../../sph/match2.sph Receptor cluster number(s): 1 Desolvation grid: ../../grids/solvmap_sev :dislim = 1.5000 maxnodes = 4 ratiom = 0.0000 minnodes = 3 :lbinsz = 0.4000 lovlap = 0.1000 sbinsz = 0.4000 sovlap = 0.1000 Input ligand: ../database_link/dud_mr_lig_01.db.gz DelPhi grid: ../../grids/rec+sph.phi vdW parms: ../../grids/vdw.parms.amb.mindock chemgrid prefix: ../../grids/chem resolution = 0.3300000 number of points = 1621155 a maximum of 1 bad contacts will be allowed for each orientation random seed = 777 natmin = 5 natmax = 100 nsav = 50000 300000 molecules may be searched in this run hydrogens always written out zooming will not be done trilinear interpolation is always done Orientation minimization: best conformation Simplex parameters: Max energy to minimize: 0.100E+16 Max step-size for translation (A): 0.20 Max step-size for euler angles: 5.00 Min energy change for restart (kcal/mol): 1.00 Energy convergence tolerance (kcal/mol): 0.10 Max number of iterations: 200 database version: 5.2 7 colors used in ligand database file 12 colors used in receptor sphere file ligand color positive 1 merged number = 1 ligand color negative 2 merged number = 2 ligand color acceptor 3 merged number = 3 ligand color donor 4 merged number = 4 ligand color ester_o 5 merged number = 5 ligand color amide_o 6 merged number = 6 ligand color neutral 7 merged number = 7 receptor color positive 1 merged number = 1 receptor color negative 2 merged number = 2 receptor color acceptor 3 merged number = 3 receptor color donor 4 merged number = 4 receptor color ester_o 5 merged number = 5 receptor color amide_o 6 merged number = 6 receptor color neutral 7 merged number = 7 receptor color not_neutral 8 merged number = 8 receptor color positive_or_donor 9 merged number = 9 receptor color negative_or_acceptor 10 merged number = 10 receptor color neutral_or_acceptor_or_donor 11 merged number = 11 receptor color donacc 12 merged number = 12 12 colors in merged ligand-sphere color table this is a run with labeled color matching: match positive negative match positive negative_or_acceptor match positive not_neutral match negative positive match negative positive_or_donor match negative not_neutral match donor acceptor match donor donacc match donor negative_or_acceptor match donor neutral_or_acceptor_or_donor match donor not_neutral match acceptor donor match acceptor donacc match acceptor positive_or_donor match acceptor neutral_or_acceptor_or_donor match acceptor not_neutral match neutral neutral match neutral neutral_or_acceptor_or_donor match ester_o donor match ester_o donacc match ester_o positive_or_donor match ester_o not_neutral match amide_o donor match amide_o donacc match amide_o positive_or_donor match amide_o not_neutral 26 chemical matches specified grid min 3.652000 54.08400 -3.037998 grid max 39.65200 95.08400 34.46200 using cluster number: 1 output file: test.eel1.gz Receptor spheres: 45 0 0 0 0 0 42 non-zero colors in receptor sphere cluster cluster 1 with 45 spheres 9001 9002 9003 9004 9005 9006 9007 9008 9009 9010 9011 9012 9013 9014 9015 9016 9017 9018 9019 9020 9021 9022 9023 9024 9025 9026 9027 9028 9029 9030 9031 9032 9033 9034 9035 9036 9037 9038 9039 9040 9041 9042 9043 9044 9045 maximum receptor sphere-sphere distance 12.29247 mol# id_num matched nscored nhvy nconfs part.fcn Time E id_num nbr elect + vdW + polsol + apolsol = Total 1 C02574284 1906 31483 23 1 151.0 0.17 E C02574284 1 -3.68 -32.24 7.19 -5.84 -34.57 2 C02574284 1837 20074 23 1 113.6 0.10 E C02574284 1 -4.24 -27.58 7.10 -5.84 -30.56 3 C02574285 2629 38196 23 1 256.7 0.18 E C02574285 1 -4.24 -33.27 7.71 -5.60 -35.39 4 C02574285 2606 25282 23 1 169.5 0.12 E C02574285 1 -3.00 -29.88 7.56 -5.60 -30.92 5 C03814383 1931 47177 23 1 251.0 0.22 E C03814383 1 -3.77 -31.40 6.27 -5.83 -34.73 6 C03814383 1229 24935 23 1 80.4 0.12 E C03814383 1 -3.71 -33.11 6.26 -5.82 -36.37 7 C03831941 3952 65 32 2 0.01 bump 8 C03831941 14371 9844 32 2 0.15 bump 9 C03831941 2827 17 32 2 0.01 bump 10 C03831941 14436 9914 32 2 0.15 bump 11 C03833819 3276 50306 27 18 54.0 0.07 E C03833819 4 -3.52 43.85 8.13 -3.66 44.80 12 C03833819 2857 30543 27 18 36.0 0.05 E C03833819 4 -3.08 33.79 8.13 -3.85 34.98 13 C03833820 2006 4006 28 9 0.0 0.02 E C03833820 3 -6.20 29.56 10.08 -3.74 29.69 14 C03833820 3552 59808 28 18 62.0 0.09 E C03833820 4 -7.88 4.40 10.09 -3.83 2.79 15 C03833821 2849 213144 26 54 232.0 0.23 E C03833821 4 -8.57 -22.29 10.84 -1.24 -21.26 16 C03833821 3121 269964 26 54 134.6 0.29 E C03833821 4 -9.24 -23.45 10.91 -1.26 -23.04 17 C03833822 2633 186085 26 54 156.3 0.21 E C03833822 4 -8.18 -16.61 9.68 -1.33 -16.43 18 C03833822 2837 217422 26 54 41.1 0.24 E C03833822 4 -7.22 -20.68 9.74 -1.33 -19.49 19 C03833823 3311 251746 24 6 454.3 0.41 E C03833823 2 -7.37 -30.18 8.98 -4.26 -32.84 20 C03833823 3113 236629 24 6 484.7 0.38 E C03833823 2 -6.73 -35.03 8.99 -4.22 -36.99 21 C03833824 3183 241822 26 18 282.0 0.31 E C03833824 3 -5.87 -31.26 14.14 -2.88 -25.87 22 C03833824 2709 138550 26 18 226.0 0.18 E C03833824 3 -5.40 -21.59 14.03 -2.77 -15.73 23 C03833825 7942 9370 29 2 4.0 0.05 E C03833825 2 -1.21 163.00 14.45 -6.78 169.45 24 C03833825 9140 3884 29 2 2.0 0.03 E C03833825 2 1.38 78.13 14.40 -6.83 87.08 25 C03833952 1367 29552 23 1 178.9 0.15 E C03833952 1 -3.74 -28.68 5.62 -5.74 -32.55 26 C03833952 1601 31502 23 1 178.6 0.16 E C03833952 1 -3.29 -31.60 5.64 -5.74 -34.99 27 C03833953 1682 23185 23 1 92.9 0.12 E C03833953 1 -3.13 -19.29 5.08 -5.71 -23.04 28 C03833953 1759 27187 23 1 152.0 0.13 E C03833953 1 -2.83 -21.97 5.09 -5.70 -25.41 29 C03833954 1502 44238 23 3 62.0 0.13 E C03833954 2 -4.45 -27.58 3.89 -4.10 -32.23 30 C03833954 1373 39794 23 3 97.7 0.11 E C03833954 2 -4.47 -29.44 3.89 -4.09 -34.11 31 C04646295 13632 17420 34 56862 2.0 0.13 E C04646295 4 -2.11 453.69 10.58 3.87 466.02 32 C04646295 7805 125087 34 6804 0.18 bump 33 C04646295 2166 4227 34 34020 0.02 bump EOF: ../database_link/dud_mr_lig_01.db.gz end of file encountered total minimization steps = 471924 for debugging, time = 5.580000 solvation corrected scores: (a) 1 C03833823 score: -36.991 nathvy = 24 nconfs = 6 2 C03814383 score: -36.374 nathvy = 23 nconfs = 1 3 C02574285 score: -35.388 nathvy = 23 nconfs = 1 4 C03833952 score: -34.994 nathvy = 23 nconfs = 1 5 C03814383 score: -34.726 nathvy = 23 nconfs = 1 6 C02574284 score: -34.574 nathvy = 23 nconfs = 1 7 C03833954 score: -34.108 nathvy = 23 nconfs = 3 8 C03833823 score: -32.836 nathvy = 24 nconfs = 6 9 C03833952 score: -32.551 nathvy = 23 nconfs = 1 10 C03833954 score: -32.235 nathvy = 23 nconfs = 3 11 C02574285 score: -30.920 nathvy = 23 nconfs = 1 12 C02574284 score: -30.563 nathvy = 23 nconfs = 1 13 C03833824 score: -25.871 nathvy = 26 nconfs = 18 14 C03833953 score: -25.410 nathvy = 23 nconfs = 1 15 C03833953 score: -23.044 nathvy = 23 nconfs = 1 16 C03833821 score: -23.042 nathvy = 26 nconfs = 54 17 C03833821 score: -21.260 nathvy = 26 nconfs = 54 18 C03833822 score: -19.488 nathvy = 26 nconfs = 54 19 C03833822 score: -16.434 nathvy = 26 nconfs = 54 20 C03833824 score: -15.730 nathvy = 26 nconfs = 18 21 C03833820 score: 2.789 nathvy = 28 nconfs = 18 22 C03833820 score: 29.693 nathvy = 28 nconfs = 9 23 C03833819 score: 34.979 nathvy = 27 nconfs = 18 24 C03833819 score: 44.800 nathvy = 27 nconfs = 18 25 C03833825 score: 87.081 nathvy = 29 nconfs = 2 26 C03833825 score: 169.455 nathvy = 29 nconfs = 2 27 C04646295 score: 466.025 nathvy = 34 nconfs = 56862 Date and Time: 26-Jan-12 19:48:11 elapsed time (sec): 5.6100